Transformer models in biomedicine

S Madan, M Lentzen, J Brandt, D Rueckert… - BMC Medical Informatics …, 2024 - Springer
Deep neural networks (DNN) have fundamentally revolutionized the artificial intelligence
(AI) field. The transformer model is a type of DNN that was originally used for the natural …

Language model and its interpretability in biomedicine: A sco** review

D Lyu, X Wang, Y Chen, F Wang - Iscience, 2024 - cell.com
With advancements in large language models, artificial intelligence (AI) is undergoing a
paradigm shift where AI models can be repurposed with minimal effort across various …

[HTML][HTML] Hierarchical pretraining on multimodal electronic health records

X Wang, J Luo, J Wang, Z Yin, S Cui… - Proceedings of the …, 2023 - ncbi.nlm.nih.gov
Pretraining has proven to be a powerful technique in natural language processing (NLP),
exhibiting remarkable success in various NLP downstream tasks. However, in the medical …

Few-shot ICD coding with knowledge transfer and evidence representation

F Teng, Q Zhang, X Zhou, J Hu, T Li - Expert Systems with Applications, 2024 - Elsevier
The task of automatic ICD (International Classification of Diseases) coding involves
allocating appropriate ICD codes to electronic health records. Due to the long-tailed …

MBFusion: Multi-modal balanced fusion and multi-task learning for cancer diagnosis and prognosis

Z Zhang, W Yin, S Wang, X Zheng, S Dong - Computers in Biology and …, 2024 - Elsevier
Pathological images and molecular omics are important information for predicting diagnosis
and prognosis. The two kinds of heterogeneous modal data contain complementary …

Research on large-scale structured and unstructured data processing based on large language model

B Li, G Jiang, N Li, C Song - … of the International Conference on Machine …, 2024 - dl.acm.org
Since the beginning of the internet era, there has been an explosion of growth in structured
data (such as numbers, symbols, and labels) as well as unstructured data (including images …

Multimodal fusion of ehr in structures and semantics: Integrating clinical records and notes with hypergraph and llm

H Cui, X Fang, R Xu, X Kan, JC Ho, C Yang - arxiv preprint arxiv …, 2024 - arxiv.org
Electronic Health Records (EHRs) have become increasingly popular to support clinical
decision-making and healthcare in recent decades. EHRs usually contain heterogeneous …

Memorize and rank: Elevating large language models for clinical diagnosis prediction

MD Ma, X Wang, Y **ao, A Cuturrufo, VS Nori… - arxiv preprint arxiv …, 2025 - arxiv.org
Clinical diagnosis prediction models, when provided with a patient's medical history, aim to
detect potential diseases early, facilitating timely intervention and improving prognostic …

EHR-based prediction modelling meets multimodal deep learning: A systematic review of structured and textual data fusion methods

AS Teles, IR de Moura, F Silva, A Roberts, D Stahl - Information Fusion, 2025 - Elsevier
Abstract Electronic Health Records (EHRs) have transformed healthcare by digitally
consolidating patient medical history, encompassing structured data (eg, demographic data …

ERLNEIL-MDP: Evolutionary reinforcement learning with novelty-driven exploration for medical data processing

J Lv, BG Kim, A Slowik, BD Parameshachari… - Swarm and Evolutionary …, 2024 - Elsevier
The rapid growth of medical data presents opportunities and challenges for healthcare
professionals and researchers. To effectively process and analyze this complex and …