Multiregion neuronal activity: the forest and the trees

TA Machado, IV Kauvar, K Deisseroth - Nature Reviews Neuroscience, 2022 - nature.com
The past decade has witnessed remarkable advances in the simultaneous measurement of
neuronal activity across many brain regions, enabling fundamentally new explorations of the …

CaImAn an open source tool for scalable calcium imaging data analysis

A Giovannucci, J Friedrich, P Gunn, J Kalfon, BL Brown… - elife, 2019 - elifesciences.org
Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer
time resolution. The resulting data rates require reproducible analysis pipelines that are …

Rapid detection of neurons in widefield calcium imaging datasets after training with synthetic data

Y Zhang, G Zhang, X Han, J Wu, Z Li, X Li, G **ao… - Nature …, 2023 - nature.com
Widefield microscopy can provide optical access to multi-millimeter fields of view and
thousands of neurons in mammalian brains at video rate. However, tissue scattering and …

Minian, an open-source miniscope analysis pipeline

Z Dong, W Mau, Y Feng, ZT Pennington, L Chen… - Elife, 2022 - elifesciences.org
Miniature microscopes have gained considerable traction for in vivo calcium imaging in
freely behaving animals. However, extracting calcium signals from raw videos is a …

FIOLA: an accelerated pipeline for fluorescence imaging online analysis

C Cai, C Dong, J Friedrich, M Rozsa… - Nature …, 2023 - nature.com
Optical microscopy methods such as calcium and voltage imaging enable fast activity
readout of large neuronal populations using light. However, the lack of corresponding …

New imaging instrument in animal models: Two‐photon miniature microscope and large field of view miniature microscope for freely behaving animals

C Guo, A Wang, H Cheng, L Chen - Journal of Neurochemistry, 2023 - Wiley Online Library
Over the past decade, novel optical imaging tools have been developed for imaging
neuronal activities along with the evolution of fluorescence indicators with brighter …

A cholinergic circuit that relieves pain despite opioid tolerance

S Sullere, A Kunczt, DS McGehee - Neuron, 2023 - cell.com
Chronic pain is a tremendous burden for afflicted individuals and society. Although opioids
effectively relieve pain, significant adverse outcomes limit their utility and efficacy. To …

[HTML][HTML] Natural and Artificial Intelligence: A brief introduction to the interplay between AI and neuroscience research

T Macpherson, A Churchland, T Sejnowski, J DiCarlo… - Neural Networks, 2021 - Elsevier
Neuroscience and artificial intelligence (AI) share a long history of collaboration. Advances
in neuroscience, alongside huge leaps in computer processing power over the last few …

A perspective on astrocyte regulation of neural circuit function and animal behavior

J Hirrlinger, A Nimmerjahn - Glia, 2022 - Wiley Online Library
Studies over the past two decades have demonstrated that astrocytes are tightly associated
with neurons and play pivotal roles in neural circuit development, operation, and adaptation …

Fast, scalable, and statistically robust cell extraction from large-scale neural calcium imaging datasets

F Dinç, H Inan, O Hernandez, C Schmuckermair… - BioRxiv, 2021 - biorxiv.org
State-of-the-art Ca2+ imaging studies that monitor large-scale neural dynamics can produce
video datasets~ 10 terabytes or more in total size, roughly comparable to~ 10,000 …