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Multiregion neuronal activity: the forest and the trees
The past decade has witnessed remarkable advances in the simultaneous measurement of
neuronal activity across many brain regions, enabling fundamentally new explorations of the …
neuronal activity across many brain regions, enabling fundamentally new explorations of the …
CaImAn an open source tool for scalable calcium imaging data analysis
Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer
time resolution. The resulting data rates require reproducible analysis pipelines that are …
time resolution. The resulting data rates require reproducible analysis pipelines that are …
Rapid detection of neurons in widefield calcium imaging datasets after training with synthetic data
Widefield microscopy can provide optical access to multi-millimeter fields of view and
thousands of neurons in mammalian brains at video rate. However, tissue scattering and …
thousands of neurons in mammalian brains at video rate. However, tissue scattering and …
Minian, an open-source miniscope analysis pipeline
Miniature microscopes have gained considerable traction for in vivo calcium imaging in
freely behaving animals. However, extracting calcium signals from raw videos is a …
freely behaving animals. However, extracting calcium signals from raw videos is a …
FIOLA: an accelerated pipeline for fluorescence imaging online analysis
Optical microscopy methods such as calcium and voltage imaging enable fast activity
readout of large neuronal populations using light. However, the lack of corresponding …
readout of large neuronal populations using light. However, the lack of corresponding …
New imaging instrument in animal models: Two‐photon miniature microscope and large field of view miniature microscope for freely behaving animals
Over the past decade, novel optical imaging tools have been developed for imaging
neuronal activities along with the evolution of fluorescence indicators with brighter …
neuronal activities along with the evolution of fluorescence indicators with brighter …
A cholinergic circuit that relieves pain despite opioid tolerance
Chronic pain is a tremendous burden for afflicted individuals and society. Although opioids
effectively relieve pain, significant adverse outcomes limit their utility and efficacy. To …
effectively relieve pain, significant adverse outcomes limit their utility and efficacy. To …
[HTML][HTML] Natural and Artificial Intelligence: A brief introduction to the interplay between AI and neuroscience research
Neuroscience and artificial intelligence (AI) share a long history of collaboration. Advances
in neuroscience, alongside huge leaps in computer processing power over the last few …
in neuroscience, alongside huge leaps in computer processing power over the last few …
A perspective on astrocyte regulation of neural circuit function and animal behavior
J Hirrlinger, A Nimmerjahn - Glia, 2022 - Wiley Online Library
Studies over the past two decades have demonstrated that astrocytes are tightly associated
with neurons and play pivotal roles in neural circuit development, operation, and adaptation …
with neurons and play pivotal roles in neural circuit development, operation, and adaptation …
Fast, scalable, and statistically robust cell extraction from large-scale neural calcium imaging datasets
State-of-the-art Ca2+ imaging studies that monitor large-scale neural dynamics can produce
video datasets~ 10 terabytes or more in total size, roughly comparable to~ 10,000 …
video datasets~ 10 terabytes or more in total size, roughly comparable to~ 10,000 …