Redundancy analysis: A Swiss Army Knife for landscape genomics

T Capblancq, BR Forester - Methods in Ecology and Evolution, 2021‏ - Wiley Online Library
Landscape genomics identifies how spatial and environmental factors structure the amount
and distribution of genetic variation among populations. Landscape genomic analyses have …

A roadmap for understanding the evolutionary significance of structural genomic variation

C Mérot, RA Oomen, A Tigano… - Trends in Ecology & …, 2020‏ - cell.com
Structural genomic variants (SVs) are ubiquitous and play a major role in adaptation and
speciation. Yet, comparative and population genomics have focused predominantly on gene …

Copy number variation introduced by a massive mobile element facilitates global thermal adaptation in a fungal wheat pathogen

SM Tralamazza, E Gluck-Thaler, A Feurtey… - Nature …, 2024‏ - nature.com
Copy number variation (CNV) can drive rapid evolution in changing environments. In
microbial pathogens, such adaptation is a key factor underpinning epidemics and …

Insights into invasive species from whole‐genome resequencing

HL North, A McGaughran, CD Jiggins - Molecular Ecology, 2021‏ - Wiley Online Library
Studies of invasive species can simultaneously inform management strategies and quantify
rapid evolution in the wild. The role of genomics in invasion science is increasingly …

The evolutionary consequences of dams and other barriers for riverine fishes

LJ Zarri, EP Palkovacs, DM Post, NO Therkildsen… - …, 2022‏ - academic.oup.com
Dams and other anthropogenic barriers have caused global ecological and hydrological
upheaval in the blink of the geological eye. In the present article, we synthesize 307 studies …

The population genetics of adaptation through copy number variation in a fungal plant pathogen

L Stalder, U Oggenfuss, N Mohd‐Assaad… - Molecular …, 2023‏ - Wiley Online Library
Microbial pathogens can adapt rapidly to changing environments such as the application of
pesticides or host resistance. Copy number variations (CNVs) are a major source of …

Harnessing the power of multi‐omics data for predicting climate change response

KKS Layton, IR Bradbury - Journal of Animal Ecology, 2022‏ - Wiley Online Library
Predicting how species will respond to future climate change is of central importance in the
midst of the global biodiversity crisis, and recent work has demonstrated the utility of …

Structural genomic variation in the inbred Scandinavian wolf population contributes to the realized genetic load but is positively affected by immigration

L Smeds, LSA Huson, H Ellegren - Evolutionary Applications, 2024‏ - Wiley Online Library
When populations decrease in size and may become isolated, genomic erosion by loss of
diversity from genetic drift and accumulation of deleterious mutations is likely an inevitable …

Widespread deviant patterns of heterozygosity in whole-genome sequencing due to autopolyploidy, repeated elements, and duplication

X Dallaire, R Bouchard, P Hénault… - Genome Biology and …, 2023‏ - academic.oup.com
Most population genomic tools rely on accurate single nucleotide polymorphism (SNP)
calling and filtering to meet their underlying assumptions. However, genomic complexity …

Expanding the conservation genomics toolbox: incorporating structural variants to enhance genomic studies for species of conservation concern

J Wold, KP Koepfli, SJ Galla, D Eccles… - Molecular …, 2021‏ - Wiley Online Library
Structural variants (SVs) are large rearrangements (> 50 bp) within the genome that impact
gene function and the content and structure of chromosomes. As a result, SVs are a …