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Candidate gene–environment interaction research: Reflections and recommendations
Studying how genetic predispositions come together with environmental factors to contribute
to complex behavioral outcomes has great potential for advancing the understanding of the …
to complex behavioral outcomes has great potential for advancing the understanding of the …
Chromosome conformation capture technologies and their impact in understanding genome function
It has been more than a decade since the first chromosome conformation capture (3C) assay
was described. The assay was originally devised to measure the frequency with which two …
was described. The assay was originally devised to measure the frequency with which two …
H3K4me1 facilitates promoter-enhancer interactions and gene activation during embryonic stem cell differentiation
Histone H3 lysine 4 mono-methylation (H3K4me1) marks poised or active enhancers.
KMT2C (MLL3) and KMT2D (MLL4) catalyze H3K4me1, but their histone methyltransferase …
KMT2C (MLL3) and KMT2D (MLL4) catalyze H3K4me1, but their histone methyltransferase …
WashU epigenome browser update 2022
Abstract WashU Epigenome Browser (https://epigenomegateway. wustl. edu/browser/) is a
web-based genomic data exploration tool that provides visualization, integration, and …
web-based genomic data exploration tool that provides visualization, integration, and …
HiGlass: web-based visual exploration and analysis of genome interaction maps
P Kerpedjiev, N Abdennur, F Lekschas, C McCallum… - Genome biology, 2018 - Springer
We present HiGlass, an open source visualization tool built on web technologies that
provides a rich interface for rapid, multiplex, and multiscale navigation of 2D genomic maps …
provides a rich interface for rapid, multiplex, and multiscale navigation of 2D genomic maps …
Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom
Hi-C experiments study how genomes fold in 3D, generating contact maps containing
features as small as 20 bp and as large as 200 Mb. Here we introduce Juicebox, a tool for …
features as small as 20 bp and as large as 200 Mb. Here we introduce Juicebox, a tool for …
Activation of proto-oncogenes by disruption of chromosome neighborhoods
Oncogenes are activated through well-known chromosomal alterations such as gene fusion,
translocation, and focal amplification. In light of recent evidence that the control of key genes …
translocation, and focal amplification. In light of recent evidence that the control of key genes …
Ensembl 2016
Abstract The Ensembl project (http://www. ensembl. org) is a system for genome annotation,
analysis, storage and dissemination designed to facilitate the access of genomic annotation …
analysis, storage and dissemination designed to facilitate the access of genomic annotation …
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
Here, we introduce the 3D Genome Browser, http://3dgenome. org, which allows users to
conveniently explore both their own and over 300 publicly available chromatin interaction …
conveniently explore both their own and over 300 publicly available chromatin interaction …
3D chromatin structures of mature gametes and structural reprogramming during mammalian embryogenesis
Y Ke, Y Xu, X Chen, S Feng, Z Liu, Y Sun, X Yao, F Li… - Cell, 2017 - cell.com
High-order chromatin structure plays important roles in gene expression regulation.
Knowledge of the dynamics of 3D chromatin structures during mammalian embryo …
Knowledge of the dynamics of 3D chromatin structures during mammalian embryo …