Genotype by environment interactions in forest tree breeding: review of methodology and perspectives on research and application

Y Li, M Suontama, RD Burdon, HS Dungey - Tree Genetics & Genomes, 2017 - Springer
Genotype by environment interaction (G× E) refers to the comparative performances of
genotypes differing among environments, representing differences in genotype rankings or …

Integrating high-throughput phenoty** and statistical genomic methods to genetically improve longitudinal traits in crops

FF Moreira, HR Oliveira, JJ Volenec… - Frontiers in Plant …, 2020 - frontiersin.org
The rapid development of remote sensing in agronomic research allows the dynamic nature
of longitudinal traits to be adequately described, which may enhance the genetic …

[LIVRE][B] Genetic data analysis for plant and animal breeding

F Isik, J Holland, C Maltecca - 2017 - Springer
We wrote this book to fill the gap between textbooks of quantitative genetic theory and
software manuals that provide details on analytical methods but little context or perspective …

Quantitative analysis of population-scale family trees with millions of relatives

J Kaplanis, A Gordon, T Shor, O Weissbrod, D Geiger… - Science, 2018 - science.org
Family trees have vast applications in fields as diverse as genetics, anthropology, and
economics. However, the collection of extended family trees is tedious and usually relies on …

Heritability in plant breeding on a genotype-difference basis

P Schmidt, J Hartung, J Bennewitz, HP Piepho - Genetics, 2019 - academic.oup.com
In plant breeding, heritability is often calculated (i) as a measure of precision of trials and/or
(ii) to compute the response to selection. It is usually estimated on an entry-mean basis …

Combining high‐throughput phenoty** and genomic information to increase prediction and selection accuracy in wheat breeding

J Crain, S Mondal, J Rutkoski, RP Singh… - The plant …, 2018 - Wiley Online Library
Genomics and phenomics have promised to revolutionize the field of plant breeding. The
integration of these two fields has just begun and is being driven through big data by …

[HTML][HTML] Selective breeding as a mitigation tool for methane emissions from dairy cattle

Y de Haas, RF Veerkamp, G De Jong, MN Aldridge - Animal, 2021 - Elsevier
The global livestock sector, particularly ruminants, contributes substantially to the total
anthropogenic greenhouse gases. Management and dietary solutions to reduce enteric …

AGHmatrix: genetic relationship matrices in R

RR Amadeu, AAF Garcia, PR Munoz… - Bioinformatics, 2023 - academic.oup.com
Motivation The resemble between relatives computed from pedigree and genomic data is an
important resource for geneticists and ecologists, who are interested in understanding how …

AGHmatrix: R package to construct relationship matrices for autotetraploid and diploid species: a blueberry example

RR Amadeu, C Cellon, JW Olmstead… - The plant …, 2016 - Wiley Online Library
Progress in the rate of improvement in autopolyploid species has been limited compared
with diploids, mainly because software and methods to apply advanced prediction and …

Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum

SB Fernandes, KOG Dias, DF Ferreira… - Theoretical and applied …, 2018 - Springer
Key message We compare genomic selection methods that use correlated traits to help
predict biomass yield in sorghum, and find that trait-assisted genomic selection performs …