Early diagnosis of complex diseases by molecular biomarkers, network biomarkers, and dynamical network biomarkers

R Liu, X Wang, K Aihara, L Chen - Medicinal research reviews, 2014 - Wiley Online Library
Many studies have been carried out for early diagnosis of complex diseases by finding
accurate and robust biomarkers specific to respective diseases. In particular, recent rapid …

Insulin and Alzheimer's disease: untangling the web

S Craft, B Cholerton, LD Baker - Journal of Alzheimer's …, 2012 - journals.sagepub.com
The recognition of Alzheimer's disease (AD) as a heterogeneous disorder that results from
incremental pathological changes in dynamic organismic systems is essential to move …

Network-based drug repositioning

Z Wu, Y Wang, L Chen - Molecular BioSystems, 2013 - pubs.rsc.org
Network-based computational biology, with the emphasis on biomolecular interactions and
omics-data integration, has had success in drug development and created new directions …

Network pharmacology strategies toward multi-target anticancer therapies: from computational models to experimental design principles

J Tang, T Aittokallio - Current pharmaceutical design, 2014 - ingentaconnect.com
Polypharmacology has emerged as novel means in drug discovery for improving treatment
response in clinical use. However, to really capitalize on the polypharmacological effects of …

Network pharmacology: exploring the resources and methodologies

J Muhammad, A Khan, A Ali, L Fang… - Current Topics in …, 2018 - ingentaconnect.com
Multi-target and combinatorial therapies have been focused for the past several decades.
These approaches achieved considerable therapeutic efficacy by modulating the activities of …

(Differential) co-expression analysis of gene expression: a survey of best practices

HA Chowdhury, DK Bhattacharyya… - IEEE/ACM transactions …, 2019 - ieeexplore.ieee.org
Analysis of gene expression data is widely used in transcriptomic studies to understand
functions of molecules inside a cell and interactions among molecules. Differential co …

Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease

IR Konigsberg, T Vu, W Liu, EM Litkowski, KA Pratte… - BMC genomics, 2024 - Springer
Background Studies have identified individual blood biomarkers associated with chronic
obstructive pulmonary disease (COPD) and related phenotypes. However, complex …

Grouped gene selection of cancer via adaptive sparse group lasso based on conditional mutual information

J Li, W Dong, D Meng - IEEE/ACM transactions on …, 2017 - ieeexplore.ieee.org
This paper deals with the problems of cancer classification and grouped gene selection. The
weighted gene co-expression network on cancer microarray data is employed to identify …

Coexpression network analysis in chronic hepatitis B and C hepatic lesions reveals distinct patterns of disease progression to hepatocellular carcinoma

D He, ZP Liu, M Honda, S Kaneko… - Journal of molecular cell …, 2012 - academic.oup.com
Chronic infections with the hepatitis B virus (HBV) and hepatitis C virus (HCV) are the major
risks of hepatocellular carcinoma (HCC), and great efforts have been made towards the …

Detecting early-warning signals of type 1 diabetes and its leading biomolecular networks by dynamical network biomarkers

X Liu, R Liu, XM Zhao, L Chen - BMC medical genomics, 2013 - Springer
Abstract Background Type 1 diabetes (T1D) is a complex disease and harmful to human
health, and most of the existing biomarkers are mainly to measure the disease phenotype …