Experimental Evolution with Caenorhabditis Nematodes

H Teotónio, S Estes, PC Phillips, CF Baer - Genetics, 2017 - academic.oup.com
The hermaphroditic nematode Caenorhabditis elegans has been one of the primary model
systems in biology since the 1970s, but only within the last two decades has this nematode …

Examining sources of error in PCR by single-molecule sequencing

V Potapov, JL Ong - PloS one, 2017 - journals.plos.org
Next-generation sequencing technology has enabled the detection of rare genetic or
somatic mutations and contributed to our understanding of disease progression and …

Excess of mutational jackpot events in expanding populations revealed by spatial Luria–Delbrück experiments

D Fusco, M Gralka, J Kayser, A Anderson… - Nature …, 2016 - nature.com
The genetic diversity of growing cellular populations, such as biofilms, solid tumours or
develo** embryos, is thought to be dominated by rare, exceptionally large mutant clones …

Drivers of within-host genetic diversity in acute infections of viruses

M Gelbart, S Harari, Y Ben-Ari, T Kustin, D Wolf… - PLoS …, 2020 - journals.plos.org
Genetic diversity is the fuel of evolution and facilitates adaptation to novel environments.
However, our understanding of what drives differences in the genetic diversity during the …

Measurement error and variant-calling in deep Illumina sequencing of HIV

M Howison, M Coetzer, R Kantor - Bioinformatics, 2019 - academic.oup.com
Motivation Next-generation deep sequencing of viral genomes, particularly on the Illumina
platform, is increasingly applied in HIV research. Yet, there is no standard protocol or …

Genotype‐phenotype analysis of MT‐ATP6‐associated Leigh syndrome

JH Na, YM Lee - Acta Neurologica Scandinavica, 2022 - Wiley Online Library
Abstract Objectives Mitochondrial DNA (mtDNA)‐associated Leigh syndrome (LS) is
characterized by maternal inheritance, and the heteroplasmic mutant load of mtDNA …

Association Between Epilepsy and Leigh Syndrome With MT-ND3 Mutation, Particularly the m.10191T>C Point Mutation

JH Na, MJ Lee, CH Lee, YM Lee - Frontiers in Neurology, 2021 - frontiersin.org
Background and Purpose: Recent advances in molecular genetic testing have led to a rapid
increase in the understanding of the genetics of Leigh syndrome. Several studies have …

Heteroplasmic mutant load differences in mitochondrial DNA-associated Leigh syndrome

JH Na, YM Lee - Pediatric Neurology, 2023 - Elsevier
Abstract Background Mitochondrial DNA (mtDNA)-associated Leigh syndrome is influenced
by mutant pathogenicity and corresponding heteroplasmic loads; however, the manner in …

FERMI: a novel method for sensitive detection of rare mutations in somatic tissue

LA Liggett, A Sharma, S De… - G3: Genes, Genomes …, 2019 - academic.oup.com
With growing interest in monitoring mutational processes in normal tissues, tumor
heterogeneity, and cancer evolution under therapy, the ability to accurately and …

Epigenetic loss of heterozygosity of Apc and an inflammation-associated mutational signature detected in Lrig1+/−-driven murine colonic adenomas

JL Preston, N Stiffler - BMC cancer, 2020 - Springer
Background The loss of a single copy of adenomatous polyposis coli (Apc) in leucine-rich
repeats and immunoglobulin-like domains 1 (Lrig1)-expressing colonic progenitor cells …