Graph-theoretical analysis of biological networks: a survey

K Erciyes - Computation, 2023 - mdpi.com
Biological networks such as protein interaction networks, gene regulation networks, and
metabolic pathways are examples of complex networks that are large graphs with small …

Optimizing graph algorithms on pregel-like systems

S Salihoglu, J Widom - 2014 - ilpubs.stanford.edu
We study the problem of implementing graph algorithms efficiently on Pregel-like systems,
which can be surprisingly challenging. Standard graph algorithms in this setting can incur …

Engineering a scalable high quality graph partitioner

M Holtgrewe, P Sanders… - 2010 IEEE International …, 2010 - ieeexplore.ieee.org
We describe an approach to parallel graph partitioning that scales to hundreds of
processors and produces a high solution quality. For example, for many instances from …

[BOOK][B] Combinatorial scientific computing

U Naumann, O Schenk - 2012 - api.taylorfrancis.com
Combinatorial techniques have become essential tools across the landscape of
computational science, and some of the combinatorial ideas undergirding these tools are …

Parallel community detection for massive graphs

EJ Riedy, H Meyerhenke, D Ediger… - Parallel Processing and …, 2012 - Springer
Tackling the current volume of graph-structured data requires parallel tools. We extend our
work on analyzing such massive graph data with the first massively parallel algorithm for …

Efficient Approximation Algorithms for Weighted -Matching

A Khan, A Pothen, M Mostofa Ali Patwary… - SIAM Journal on …, 2016 - SIAM
We describe a half-approximation algorithm, b-Suitor, for computing a b-Matching of
maximum weight in a graph with weights on the edges. b-Matching is a generalization of the …

Scalable hedonic coalition formation for task allocation with heterogeneous robots

E Czarnecki, A Dutta - Intelligent Service Robotics, 2021 - Springer
Tasks in the real world are complex and often require multiple robots to collaborate to be
serviced. In many cases, a task might require different sensory inputs and actuation outputs …

Scalable multi-threaded community detection in social networks

J Riedy, DA Bader… - 2012 IEEE 26th …, 2012 - ieeexplore.ieee.org
The volume of existing graph-structured data requires improved parallel tools and
algorithms. Finding communities, smaller sub graphs densely connected within the sub …

New effective multithreaded matching algorithms

F Manne, M Halappanavar - 2014 IEEE 28th International …, 2014 - ieeexplore.ieee.org
Matching is an important combinatorial problem with a number of applications in areas such
as community detection, sparse linear algebra, and network alignment. Since computing …

Distributed hedonic coalition formation for multi-robot task allocation

A Dutta, V Ufimtsev, T Said, I Jang… - 2021 IEEE 17th …, 2021 - ieeexplore.ieee.org
In this paper, we study the problem of allocating multiple heterogeneous robots to tasks. Due
to the limited capabilities of the robots, a task might need more than one robot to complete it …