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Phylogenomics and the flowering plant tree of life
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …
technologies continue to provide an impetus for plant phylogenetic study. In the past …
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from
whole genome sequencing data. It recruits organelle-associated reads using a modified …
whole genome sequencing data. It recruits organelle-associated reads using a modified …
An updated tribal classification of Lamiaceae based on plastome phylogenomics
Background A robust molecular phylogeny is fundamental for develo** a stable
classification and providing a solid framework to understand patterns of diversification …
classification and providing a solid framework to understand patterns of diversification …
Angiosperms at the edge: Extremity, diversity, and phylogeny
A hallmark of flowering plants is their ability to invade some of the most extreme and
dynamic habitats, including cold and dry biomes, to a far greater extent than other land …
dynamic habitats, including cold and dry biomes, to a far greater extent than other land …
GetOrganelle: a simple and fast pipeline for de novo assembly of a complete circular chloroplast genome using genome skimming data
Background: Chloroplast genes and genomes are the most important genomic data for plant
phylogeny and DNA barcoding. Since the rapid development of high throughput sequencing …
phylogeny and DNA barcoding. Since the rapid development of high throughput sequencing …
Exploration of plastid phylogenomic conflict yields new insights into the deep relationships of Leguminosae
Phylogenomic analyses have helped resolve many recalcitrant relationships in the
angiosperm tree of life, yet phylogenetic resolution of the backbone of the Leguminosae …
angiosperm tree of life, yet phylogenetic resolution of the backbone of the Leguminosae …
Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.)
Q Qiao, PP Edger, L Xue, L Qiong, J Lu… - Proceedings of the …, 2021 - pnas.org
Strawberry (Fragaria spp.) has emerged as a model system for various fundamental and
applied research in recent years. In total, the genomes of five different species have been …
applied research in recent years. In total, the genomes of five different species have been …
Phylogeny, biogeography and diversification of the mining bee family Andrenidae
The mining bees (Andrenidae) are a major bee family of over 3000 described species with a
nearly global distribution. They are a particularly significant component of northern …
nearly global distribution. They are a particularly significant component of northern …
Plastid phylogenomic insights into the evolution of Caryophyllales
The Caryophyllales includes 40 families and 12,500 species, representing a large and
diverse clade of angiosperms. Collectively, members of the clade grow on all continents and …
diverse clade of angiosperms. Collectively, members of the clade grow on all continents and …
Phylogenomic conflict analyses in the apple genus Malus sl reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex …
Phylogenomic evidence from an increasing number of studies has demonstrated that
different data sets and analytical approaches often reconstruct strongly supported but …
different data sets and analytical approaches often reconstruct strongly supported but …