Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions

S Hoban, JL Kelley, KE Lotterhos… - The American …, 2016 - journals.uchicago.edu
Uncovering the genetic and evolutionary basis of local adaptation is a major focus of
evolutionary biology. The recent development of cost-effective methods for obtaining high …

The evolutionary genomics of species' responses to climate change

JA Aguirre-Liguori, S Ramírez-Barahona… - Nature Ecology & …, 2021 - nature.com
Climate change is a threat to biodiversity. One way that this threat manifests is through
pronounced shifts in the geographical range of species over time. To predict these shifts …

genodive version 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids

PG Meirmans - Molecular Ecology Resources, 2020 - Wiley Online Library
Abstract genodive version 3.0 is a user‐friendly program for the analysis of population
genetic data. This version presents a major update from the previous version and now offers …

Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections

O Razgour, B Forester, JB Taggart… - Proceedings of the …, 2019 - National Acad Sciences
Local adaptations can determine the potential of populations to respond to environmental
changes, yet adaptive genetic variation is commonly ignored in models forecasting species …

Genomic signals of selection predict climate-driven population declines in a migratory bird

RA Bay, RJ Harrigan, VL Underwood, HL Gibbs… - Science, 2018 - science.org
The ongoing loss of biodiversity caused by rapid climatic shifts requires accurate models for
predicting species' responses. Despite evidence that evolutionary adaptation could mitigate …

Comparing methods for detecting multilocus adaptation with multivariate genotype–environment associations

BR Forester, JR Lasky, HH Wagner… - Molecular …, 2018 - Wiley Online Library
Identifying adaptive loci can provide insight into the mechanisms underlying local
adaptation. Genotype–environment association (GEA) methods, which identify these loci …

LEA: An R package for landscape and ecological association studies

E Frichot, O François - Methods in Ecology and Evolution, 2015 - Wiley Online Library
Based on population genomic and environmental data, genomewide ecological association
studies aim at detecting allele frequencies that exhibit significant statistical association with …

A practical guide to environmental association analysis in landscape genomics

C Rellstab, F Gugerli, AJ Eckert, AM Hancock… - Molecular …, 2015 - Wiley Online Library
Landscape genomics is an emerging research field that aims to identify the environmental
factors that shape adaptive genetic variation and the gene variants that drive local …

Fast and efficient estimation of individual ancestry coefficients

E Frichot, F Mathieu, T Trouillon, G Bouchard… - Genetics, 2014 - academic.oup.com
Inference of individual ancestry coefficients, which is important for population genetic and
association studies, is commonly performed using computer-intensive likelihood algorithms …

Genomic insights into local adaptation and future climate-induced vulnerability of a keystone forest tree in East Asia

Y Sang, Z Long, X Dan, J Feng, T Shi, C Jia… - Nature …, 2022 - nature.com
Rapid global climate change is posing a substantial threat to biodiversity. The assessment of
population vulnerability and adaptive capacity under climate change is crucial for informing …