Learning the languages of the chloroplast: retrograde signaling and beyond

KX Chan, SY Phua, P Crisp, R McQuinn… - Annual review of …, 2016 - annualreviews.org
The chloroplast can act as an environmental sensor, communicating with the cell during
biogenesis and operation to change the expression of thousands of proteins. This process …

Phylogeny and molecular evolution of the green algae

F Leliaert, DR Smith, H Moreau… - Critical reviews in …, 2012 - Taylor & Francis
The green lineage (Viridiplantae) comprises the green algae and their descendants the land
plants, and is one of the major groups of oxygenic photosynthetic eukaryotes. Current …

Genomic insight into domestication of rubber tree

J Chao, S Wu, M Shi, X Xu, Q Gao, H Du, B Gao… - Nature …, 2023 - nature.com
Understanding the genetic basis of rubber tree (Hevea brasiliensis) domestication is crucial
for further improving natural rubber production to meet its increasing demand worldwide …

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Y Wang, H Tang, JD DeBarry, X Tan, J Li… - Nucleic acids …, 2012 - academic.oup.com
MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify
putative homologous chromosomal regions, and align these regions using genes as …

PGDD: a database of gene and genome duplication in plants

TH Lee, H Tang, X Wang, AH Paterson - Nucleic acids research, 2012 - academic.oup.com
Genome duplication (GD) has permanently shaped the architecture and function of many
higher eukaryotic genomes. The angiosperms (flowering plants) are outstanding models in …

An OPR3-independent pathway uses 4, 5-didehydrojasmonate for jasmonate synthesis

A Chini, I Monte, AM Zamarreño, M Hamberg… - Nature chemical …, 2018 - nature.com
Biosynthesis of the phytohormone jasmonoyl-isoleucine (JA-Ile) requires reduction of the JA
precursor 12-oxo-phytodienoic acid (OPDA) by OPDA reductase 3 (OPR3). Previous …

Ligand-receptor co-evolution shaped the jasmonate pathway in land plants

I Monte, S Ishida, AM Zamarreño, M Hamberg… - Nature chemical …, 2018 - nature.com
The phytohormone jasmonoyl-isoleucine (JA-Ile) regulates defense, growth and
developmental responses in vascular plants. Bryophytes have conserved sequences for all …

Dosage differences in 12-OXOPHYTODIENOATE REDUCTASE genes modulate wheat root growth

G Gabay, H Wang, J Zhang, JI Moriconi… - Nature …, 2023 - nature.com
Wheat, an essential crop for global food security, is well adapted to a wide variety of soils.
However, the gene networks sha** different root architectures remain poorly understood …

[HTML][HTML] Origin and evolutionary analysis of the plant-specific TIFY transcription factor family

Y Bai, Y Meng, D Huang, Y Qi, M Chen - Genomics, 2011 - Elsevier
A substantial number of transcription factor families have been investigated from all
kingdoms of life, but a particular class of plant-specific TIFY transcription factors …

Evolution of jasmonate biosynthesis and signaling mechanisms

GZ Han - Journal of experimental botany, 2017 - academic.oup.com
Jasmonates are phytohormones that modulate a wide spectrum of plant physiological
processes, especially defense against herbivores and necrotrophs. The molecular …