Structure and aggregation mechanisms in amyloids

ZL Almeida, RMM Brito - Molecules, 2020 - mdpi.com
The aggregation of a polypeptide chain into amyloid fibrils and their accumulation and
deposition into insoluble plaques and intracellular inclusions is the hallmark of several …

[HTML][HTML] Computational methods to predict protein aggregation

S Navarro, S Ventura - Current Opinion in Structural Biology, 2022 - Elsevier
In most cases, protein aggregation stems from the establishment of non-native
intermolecular contacts. The formation of insoluble protein aggregates is associated with …

Protein aggregation: in silico algorithms and applications

R Prabakaran, P Rawat, AM Thangakani, S Kumar… - Biophysical …, 2021 - Springer
Protein aggregation is a topic of immense interest to the scientific community due to its role
in several neurodegenerative diseases/disorders and industrial importance. Several in silico …

Exploring the relationships between protein sequence, structure and solubility

K Trainor, A Broom, EM Meiering - Current opinion in structural biology, 2017 - Elsevier
Aggregation can be thought of as a form of protein folding in which intermolecular
associations lead to the formation of large, insoluble assemblies. Various types of …

Driving forces for nonnative protein aggregation and approaches to predict aggregation-prone regions

G Meric, AS Robinson, CJ Roberts - Annual review of chemical …, 2017 - annualreviews.org
Nonnative protein aggregation is the process by which otherwise folded, monomeric
proteins are converted to stable aggregates composed of protein chains that have …

[HTML][HTML] Peptides as potential therapeutics for Alzheimer's disease

S Ribarič - Molecules, 2018 - mdpi.com
Intracellular synthesis, folding, trafficking and degradation of proteins are controlled and
integrated by proteostasis. The frequency of protein misfolding disorders in the human …

FISH Amyloid–a new method for finding amyloidogenic segments in proteins based on site specific co-occurence of aminoacids

P Gasior, M Kotulska - BMC bioinformatics, 2014 - Springer
Background Amyloids are proteins capable of forming fibrils whose intramolecular contact
sites assume densely packed zipper pattern. Their oligomers can underlie serious diseases …

[HTML][HTML] Using protein engineering to understand and modulate aggregation

JS Ebo, N Guthertz, SE Radford… - Current opinion in …, 2020 - Elsevier
Highlights•Computational methods identify aggregation-prone regions in protein sequences
as a guide for protein engineering.•Rational methods can reveal genotype-phenotype …

Advanced computational approaches to understand protein aggregation

D Ghosh, A Biswas, M Radhakrishna - Biophysics Reviews, 2024 - pubs.aip.org
Protein aggregation is a widespread phenomenon implicated in debilitating diseases like
Alzheimer's, Parkinson's, and cataracts, presenting complex hurdles for the field of …

Yeast prions and human prion-like proteins: sequence features and prediction methods

SM Cascarina, ED Ross - Cellular and Molecular Life Sciences, 2014 - Springer
Prions are self-propagating infectious protein isoforms. A growing number of prions have
been identified in yeast, each resulting from the conversion of soluble proteins into an …