Fluorescence microscopy: a statistics-optics perspective

M Fazel, KS Grussmayer, B Ferdman, A Radenovic… - Reviews of Modern …, 2024 - APS
Fundamental properties of light unavoidably impose features on images collected using
fluorescence microscopes. Accounting for these features is often critical in quantitatively …

Field-dependent deep learning enables high-throughput whole-cell 3D super-resolution imaging

S Fu, W Shi, T Luo, Y He, L Zhou, J Yang, Z Yang… - Nature …, 2023 - nature.com
Single-molecule localization microscopy in a typical wide-field setup has been widely used
for investigating subcellular structures with super resolution; however, field-dependent …

DeepSTORM3D: dense 3D localization microscopy and PSF design by deep learning

E Nehme, D Freedman, R Gordon, B Ferdman… - Nature …, 2020 - nature.com
An outstanding challenge in single-molecule localization microscopy is the accurate and
precise localization of individual point emitters in three dimensions in densely labeled …

Universal inverse modeling of point spread functions for SMLM localization and microscope characterization

S Liu, J Chen, J Hellgoth, LR Müller, B Ferdman… - Nature …, 2024 - nature.com
The point spread function (PSF) of a microscope describes the image of a point emitter.
Knowing the accurate PSF model is essential for various imaging tasks, including single …

Depth-enhanced high-throughput microscopy by compact PSF engineering

N Opatovski, E Nehme, N Zoref, I Barzilai… - Nature …, 2024 - nature.com
High-throughput microscopy is vital for screening applications, where three-dimensional
(3D) cellular models play a key role. However, due to defocus susceptibility, current 3D high …

Dipole-spread-function engineering for simultaneously measuring the 3D orientations and 3D positions of fluorescent molecules

T Wu, J Lu, MD Lew - Optica, 2022 - opg.optica.org
Interactions between biomolecules are characterized by where they occur and how they are
organized, eg, the alignment of lipid molecules to form a membrane. However, spatial and …

Practical sensorless aberration estimation for 3D microscopy with deep learning

D Saha, U Schmidt, Q Zhang, A Barbotin, Q Hu, N Ji… - Optics express, 2020 - opg.optica.org
Estimation of optical aberrations from volumetric intensity images is a key step in sensorless
adaptive optics for 3D microscopy. Recent approaches based on deep learning promise …

High-density volumetric super-resolution microscopy

S Daly, J Ferreira Fernandes, E Bruggeman… - Nature …, 2024 - nature.com
Volumetric super-resolution microscopy typically encodes the 3D position of single-molecule
fluorescence into a 2D image by changing the shape of the point spread function (PSF) as a …

Large-FOV 3D localization microscopy by spatially variant point spread function generation

D **ao, R Kedem Orange, N Opatovski, A Parizat… - Science …, 2024 - science.org
Accurate characterization of the microscopic point spread function (PSF) is crucial for
achieving high-performance localization microscopy (LM). Traditionally, LM assumes a …

3D printable diffractive optical elements by liquid immersion

R Orange-Kedem, E Nehme, LE Weiss… - Nature …, 2021 - nature.com
Diffractive optical elements (DOEs) are used to shape the wavefront of incident light. This
can be used to generate practically any pattern of interest, albeit with varying efficiency. A …