Comprehensive review of web servers and bioinformatics tools for cancer prognosis analysis

H Zheng, G Zhang, L Zhang, Q Wang, H Li… - Frontiers in …, 2020 - frontiersin.org
Prognostic biomarkers are of great significance to predict the outcome of patients with
cancer, to guide the clinical treatments, to elucidate tumorigenesis mechanisms, and offer …

DriverDBv3: a multi-omics database for cancer driver gene research

SH Liu, PC Shen, CY Chen, AN Hsu… - Nucleic acids …, 2020 - academic.oup.com
An integrative multi-omics database is needed urgently, because focusing only on analysis
of one-dimensional data falls far short of providing an understanding of cancer. Previously …

The SMART App: an interactive web application for comprehensive DNA methylation analysis and visualization

Y Li, D Ge, C Lu - Epigenetics & chromatin, 2019 - Springer
Abstract Background Data mining of The Cancer Genome Atlas (TCGA) data has
significantly facilitated cancer genome research and provided unprecedented opportunities …

Epigenetic dysregulation of immune-related pathways in cancer: bioinformatics tools and visualization

A Berglund, RM Putney, I Hamaidi, S Kim - Experimental & Molecular …, 2021 - nature.com
Cancer immune evasion is one of the hallmarks of carcinogenesis. Cancer cells employ
multiple mechanisms to avoid immune recognition and suppress antitumor immune …

Distinct Mechanisms of Mismatch-Repair Deficiency Delineate Two Modes of Response to Anti–PD-1 Immunotherapy in Endometrial Carcinoma

RD Chow, T Michaels, S Bellone, TMP Hartwich… - Cancer discovery, 2023 - AACR
Mismatch repair–deficient (MMRd) cancers have varied responses to immune-checkpoint
blockade (ICB). We conducted a phase II clinical trial of the PD-1 inhibitor pembrolizumab in …

Pan-cancer landscape of the RUNX protein family reveals their potential as carcinogenic biomarkers and the mechanisms underlying their action

S Pan, S Sun, B Liu, Y Hou - Journal of Translational Internal …, 2022 - degruyter.com
Background The RUNX family of transcription factors plays an important regulatory role in
tumor development. Although the importance of RUNX in certain cancer types is well known …

[HTML][HTML] A pan-cancer analysis of the oncogenic role of secreted phosphoprotein 1 (SPP1) in human cancers

Y Liu, G Ye, B Dong, L Huang, C Zhang… - Annals of …, 2022 - ncbi.nlm.nih.gov
Background Emerging evidence suggests that secreted phosphoprotein 1 (SPP1) is
involved in tumor cell progression in multiple cancer types. However, the role of SPP1 in …

Identification of INHBA as a potential biomarker for gastric cancer through a comprehensive analysis

F Liu, J Liu, X Shi, X Hu, L Wei, B Huo, L Chang… - Scientific Reports, 2023 - nature.com
Inhibin subunit beta A (INHBA) is a member of the transforming growth factor-beta (TGF-β)
superfamily that plays a fundamental role in various cancers. However, a systematic …

MMP25-AS1/hsa-miR-10a-5p/SERPINE1 axis as a novel prognostic biomarker associated with immune cell infiltration in KIRC

P Tan, H Chen, Z Huang, M Huang, Y Du, T Li… - Molecular Therapy …, 2021 - cell.com
Long non-coding RNAs (lncRNAs) play a significant role in multiple human cancers as
competing endogenous RNAs (ceRNAs). However, a systematic mRNA-microRNA (miRNA) …

Multi-omics analyses of CD276 in pan-cancer reveals its clinical prognostic value in glioblastoma and other major cancer types

L Dai, X Guo, Z **ng, Y Tao, W Liang, Z Shi, W Hu… - BMC cancer, 2023 - Springer
Background CD276 (also known as B7-H3) is one of the most important immune
checkpoints of the CD28 and B7 superfamily, and its abnormal expression is closely …