Structural variation in the sequencing era

SS Ho, AE Urban, RE Mills - Nature Reviews Genetics, 2020 - nature.com
Identifying structural variation (SV) is essential for genome interpretation but has been
historically difficult due to limitations inherent to available genome technologies. Detection …

Artificial intelligence and machine learning in precision and genomic medicine

S Quazi - Medical Oncology, 2022 - Springer
The advancement of precision medicine in medical care has led behind the conventional
symptom-driven treatment process by allowing early risk prediction of disease through …

Technological advances in cancer immunity: from immunogenomics to single-cell analysis and artificial intelligence

Y Xu, GH Su, D Ma, Y **ao, ZM Shao… - Signal Transduction and …, 2021 - nature.com
Immunotherapies play critical roles in cancer treatment. However, given that only a few
patients respond to immune checkpoint blockades and other immunotherapeutic strategies …

Towards accurate and reliable resolution of structural variants for clinical diagnosis

Z Liu, R Roberts, TR Mercer, J Xu, FJ Sedlazeck… - Genome biology, 2022 - Springer
Structural variants (SVs) are a major source of human genetic diversity and have been
associated with different diseases and phenotypes. The detection of SVs is difficult, and a …

Long-read sequencing for rare human genetic diseases

S Mitsuhashi, N Matsumoto - Journal of Human Genetics, 2020 - nature.com
During the past decade, the search for pathogenic mutations in rare human genetic
diseases has involved huge efforts to sequence coding regions, or the entire genome, using …

Tracking pre-mRNA maturation across subcellular compartments identifies developmental gene regulation through intron retention and nuclear anchoring

KH Yeom, Z Pan, CH Lin, HY Lim, W **ao… - Genome …, 2021 - genome.cshlp.org
Steps of mRNA maturation are important gene regulatory events that occur in distinct cellular
locations. However, transcriptomic analyses often lose information on the subcellular …

Artificial intelligence and cardiovascular genetics

C Krittanawong, KW Johnson, E Choi, S Kaplin… - Life, 2022 - mdpi.com
Polygenic diseases, which are genetic disorders caused by the combined action of multiple
genes, pose unique and significant challenges for the diagnosis and management of …

[HTML][HTML] Exome sequencing in genetic disease: recent advances and considerations

JP Ross, PA Dion, GA Rouleau - F1000Research, 2020 - ncbi.nlm.nih.gov
Over the past decade, exome sequencing (ES) has allowed significant advancements to the
field of disease research. By targeting the protein-coding regions of the genome, ES …

Incorporating CNV analysis improves the yield of exome sequencing for rare monogenic disorders—an important consideration for resource-constrained settings

N Louw, N Carstens, Z Lombard… - Frontiers in …, 2023 - frontiersin.org
Exome sequencing (ES) is a recommended first-tier diagnostic test for many rare monogenic
diseases. It allows for the detection of both single-nucleotide variants (SNVs) and copy …

Progress in methods for copy number variation profiling

V Gordeeva, E Sharova, G Arapidi - International journal of molecular …, 2022 - mdpi.com
Copy number variations (CNVs) are the predominant class of structural genomic variations
involved in the processes of evolutionary adaptation, genomic disorders, and disease …