Mechanisms underlying structural variant formation in genomic disorders

CMB Carvalho, JR Lupski - Nature Reviews Genetics, 2016 - nature.com
With the recent burst of technological developments in genomics, and the clinical
implementation of genome-wide assays, our understanding of the molecular basis of …

Human embryonic genetic mosaicism and its effects on development and disease

SM Waldvogel, JE Posey, MA Goodell - Nature Reviews Genetics, 2024 - nature.com
Nearly every mammalian cell division is accompanied by a mutational event that becomes
fixed in a daughter cell. When carried forward to additional cell progeny, a clone of variant …

A genome-wide mutational constraint map quantified from variation in 76,156 human genomes

S Chen, LC Francioli, JK Goodrich, RL Collins, M Kanai… - BioRxiv, 2022 - biorxiv.org
The depletion of disruptive variation caused by purifying natural selection (constraint) has
been widely used to investigate protein-coding genes underlying human disorders, but …

[HTML][HTML] A cross-disorder dosage sensitivity map of the human genome

RL Collins, JT Glessner, E Porcu, M Lepamets… - Cell, 2022 - cell.com
Rare copy-number variants (rCNVs) include deletions and duplications that occur
infrequently in the global human population and can confer substantial risk for disease. In …

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture

JRS Meadows, JM Kidd, GD Wang, HG Parker… - Genome biology, 2023 - Springer
Abstract Background The international Dog10K project aims to sequence and analyze
several thousand canine genomes. Incorporating 20× data from 1987 individuals, including …

Copy number variation introduced by a massive mobile element facilitates global thermal adaptation in a fungal wheat pathogen

SM Tralamazza, E Gluck-Thaler, A Feurtey… - Nature …, 2024 - nature.com
Copy number variation (CNV) can drive rapid evolution in changing environments. In
microbial pathogens, such adaptation is a key factor underpinning epidemics and …

The contribution of de novo coding mutations to autism spectrum disorder

I Iossifov, BJ O'roak, SJ Sanders, M Ronemus… - Nature, 2014 - nature.com
Whole exome sequencing has proven to be a powerful tool for understanding the genetic
architecture of human disease. Here we apply it to more than 2,500 simplex families, each …

Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast

DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw… - Nature …, 2017 - nature.com
Large structural variations (SVs) within genomes are more challenging to identify than
smaller genetic variants but may substantially contribute to phenotypic diversity and …

Non-coding genetic variants in human disease

F Zhang, JR Lupski - Human molecular genetics, 2015 - academic.oup.com
Genetic variants, including single-nucleotide variants (SNVs) and copy number variants
(CNVs), in the non-coding regions of the human genome can play an important role in …

A copy number variation map of the human genome

M Zarrei, JR MacDonald, D Merico… - Nature reviews …, 2015 - nature.com
A major contribution to the genome variability among individuals comes from deletions and
duplications—collectively termed copy number variations (CNVs)—which alter the diploid …