Automated high-throughput DNA synthesis and assembly

Y Ma, Z Zhang, B Jia, Y Yuan - Heliyon, 2024 - cell.com
DNA synthesis and assembly primarily revolve around the innovation and refinement of
tools that facilitate the creation of specific genes and the manipulation of entire genomes …

Recent advances in DNA assembly technologies

R Chao, Y Yuan, H Zhao - FEMS yeast research, 2015 - pmc.ncbi.nlm.nih.gov
DNA assembly is one of the most important foundational technologies for synthetic biology
and metabolic engineering. Since the development of the restriction digestion and ligation …

Homology-Integrated CRISPR–Cas (HI-CRISPR) System for One-Step Multigene Disruption in Saccharomyces cerevisiae

Z Bao, H **ao, J Liang, L Zhang, X **ong… - ACS synthetic …, 2015 - ACS Publications
One-step multiple gene disruption in the model organism Saccharomyces cerevisiae is a
highly useful tool for both basic and applied research, but it remains a challenge. Here, we …

Towards a fully automated algorithm driven platform for biosystems design

M HamediRad, R Chao, S Weisberg, J Lian… - Nature …, 2019 - nature.com
Large-scale data acquisition and analysis are often required in the successful
implementation of the design, build, test, and learn (DBTL) cycle in biosystems design …

MACBETH: multiplex automated Corynebacterium glutamicum base editing method

Y Wang, Y Liu, J Liu, Y Guo, L Fan, X Ni, X Zheng… - Metabolic …, 2018 - Elsevier
Abstract CRISPR/Cas9 or Cpf1-introduced double strand break dramatically decreases
bacterial cell survival rate, which hampers multiplex genome editing in bacteria. In addition …

Generation of chromosomal deletions in dicotyledonous plants employing a user‐friendly genome editing toolkit

J Ordon, J Gantner, J Kemna, L Schwalgun… - The Plant …, 2017 - Wiley Online Library
Genome editing facilitated by Cas9‐based RNA‐guided nucleases (RGN s) is becoming an
increasingly important and popular technique for reverse genetics in both model and non …

TALEN-mediated genome editing: prospects and perspectives

DA Wright, T Li, B Yang, MH Spalding - Biochemical Journal, 2014 - portlandpress.com
Genome editing is the practice of making predetermined and precise changes to a genome
by controlling the location of DNA DSBs (double-strand breaks) and manipulating the cell's …

Development and characterization of a CRISPR/Cas9n-based multiplex genome editing system for Bacillus subtilis

D Liu, C Huang, J Guo, P Zhang, T Chen… - Biotechnology for …, 2019 - Springer
Background Metabolic engineering has expanded from a focus on designs requiring a small
number of genetic modifications to increasingly complex designs driven by advances in …

Massively parallel CRISPR-assisted homologous recombination enables saturation editing of full-length endogenous genes in yeast

L Deng, YL Zhou, Z Cai, J Zhu, Z Li, Z Bao - Science Advances, 2024 - science.org
Performing saturation editing of chromosomal genes will enable the study of genetic variants
in situ and facilitate protein and cell engineering. However, current in vivo editing of …

Making designer mutants in model organisms

Y Peng, KJ Clark, JM Campbell, MR Panetta… - …, 2014 - journals.biologists.com
Recent advances in the targeted modification of complex eukaryotic genomes have
unlocked a new era of genome engineering. From the pioneering work using zinc-finger …