Artificial intelligence in cancer target identification and drug discovery

Y You, X Lai, Y Pan, H Zheng, J Vera, S Liu… - … and Targeted Therapy, 2022 - nature.com
Artificial intelligence is an advanced method to identify novel anticancer targets and discover
novel drugs from biology networks because the networks can effectively preserve and …

Protein‐protein interaction networks as miners of biological discovery

S Wang, R Wu, J Lu, Y Jiang, T Huang, YD Cai - Proteomics, 2022 - Wiley Online Library
Protein‐protein interactions (PPIs) form the basis of a myriad of biological pathways and
mechanism, such as the formation of protein complexes or the components of signaling …

TTD: Therapeutic Target Database describing target druggability information

Y Zhou, Y Zhang, D Zhao, X Yu, X Shen… - Nucleic acids …, 2024 - academic.oup.com
Target discovery is one of the essential steps in modern drug development, and the
identification of promising targets is fundamental for develo** first-in-class drug. A variety …

[HTML][HTML] scRank infers drug-responsive cell types from untreated scRNA-seq data using a target-perturbed gene regulatory network

C Li, X Shao, S Zhang, Y Wang, K **, P Yang, X Lu… - Cell Reports …, 2024 - cell.com
Cells respond divergently to drugs due to the heterogeneity among cell populations. Thus, it
is crucial to identify drug-responsive cell populations in order to accurately elucidate the …

Complexity of life sciences in quantum and AI era

A Pyrkov, A Aliper, D Bezrukov… - Wiley …, 2024 - Wiley Online Library
Having made significant advancements in understanding living organisms at various levels
such as genes, cells, molecules, tissues, and pathways, the field of life sciences is now …

Molecular interaction networks and drug development: Novel approach to drug target identification and drug repositioning

J Loscalzo - The FASEB Journal, 2023 - Wiley Online Library
Conventional drug discovery requires identifying a protein target believed to be important for
disease mechanism and screening compounds for those that beneficially alter the target's …

SAveRUNNER: an R-based tool for drug repurposing

G Fiscon, P Paci - BMC bioinformatics, 2021 - Springer
Background Currently, no proven effective drugs for the novel coronavirus disease COVID-
19 exist and despite widespread vaccination campaigns, we are far short from herd …

BIONIC: biological network integration using convolutions

DT Forster, SC Li, Y Yashiroda, M Yoshimura, Z Li… - Nature …, 2022 - nature.com
Biological networks constructed from varied data can be used to map cellular function, but
each data type has limitations. Network integration promises to address these limitations by …

Comprehensive network medicine-based drug repositioning via integration of therapeutic efficacy and side effects

P Paci, G Fiscon, F Conte, RS Wang… - NPJ systems biology …, 2022 - nature.com
Despite advances in modern medicine that led to improvements in cardiovascular outcomes,
cardiovascular disease (CVD) remains the leading cause of mortality and morbidity globally …

[HTML][HTML] Drug repurposing: a network-based approach to amyotrophic lateral sclerosis

G Fiscon, F Conte, S Amadio, C Volonté, P Paci - Neurotherapeutics, 2021 - Elsevier
The continuous adherence to the conventional “one target, one drug” paradigm has failed so
far to provide effective therapeutic solutions for heterogeneous and multifactorial diseases …