Domestic animals as potential reservoirs of zoonotic viral diseases

O Tomori, DO Oluwayelu - Annual review of animal biosciences, 2023 - annualreviews.org
Zoonoses are diseases and infections naturally transmitted between humans and vertebrate
animals. Over the years, zoonoses have become increasingly significant threats to global …

Structure and function of the human skin microbiome

NN Schommer, RL Gallo - Trends in microbiology, 2013 - cell.com
An abundant and diverse collection of bacteria, fungi, and viruses inhabits the human skin.
These microorganisms vary between individuals and between different sites on the skin. The …

A novel porcine circovirus distantly related to known circoviruses is associated with porcine dermatitis and nephropathy syndrome and reproductive failure

R Palinski, P Piñeyro, P Shang, F Yuan, R Guo… - Journal of …, 2017 - journals.asm.org
Porcine circovirus-associated disease (PCVAD) is clinically manifested by postweaning
multisystemic wasting syndrome (PMWS), respiratory and enteric disease, reproductive …

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

SN Naccache, S Federman, N Veeraraghavan… - Genome …, 2014 - genome.cshlp.org
Unbiased next-generation sequencing (NGS) approaches enable comprehensive pathogen
detection in the clinical microbiology laboratory and have numerous applications for public …

Metagenomics and future perspectives in virus discovery

JL Mokili, F Rohwer, BE Dutilh - Current opinion in virology, 2012 - Elsevier
Monitoring the emergence and re-emergence of viral diseases with the goal of containing
the spread of viral agents requires both adequate preparedness and quick response …

A primer on metagenomics

JC Wooley, A Godzik, I Friedberg - PLoS computational biology, 2010 - journals.plos.org
Metagenomics is a discipline that enables the genomic study of uncultured microorganisms.
Faster, cheaper sequencing technologies and the ability to sequence uncultured microbes …

Human skin microbiota: high diversity of DNA viruses identified on the human skin by high throughput sequencing

V Foulongne, V Sauvage, C Hebert, O Dereure… - PloS one, 2012 - journals.plos.org
The human skin is a complex ecosystem that hosts a heterogeneous flora. Until recently, the
diversity of the cutaneous microbiota was mainly investigated for bacteria through culture …

Expanding the RNA virosphere by unbiased metagenomics

YZ Zhang, YM Chen, W Wang, XC Qin… - Annual Review of …, 2019 - annualreviews.org
Although viruses comprise the most abundant genetic material in the biosphere, to date only
several thousand virus species have been formally defined. Such a limited perspective on …

Metagenomics for pathogen detection in public health

RR Miller, V Montoya, JL Gardy, DM Patrick, P Tang - Genome medicine, 2013 - Springer
Traditional pathogen detection methods in public health infectious disease surveillance rely
upon the identification of agents that are already known to be associated with a particular …

Seeker: alignment-free identification of bacteriophage genomes by deep learning

N Auslander, AB Gussow, S Benler, YI Wolf… - Nucleic acids …, 2020 - academic.oup.com
Recent advances in metagenomic sequencing have enabled discovery of diverse, distinct
microbes and viruses. Bacteriophages, the most abundant biological entity on Earth, evolve …