Mechanisms of enhancer action: the known and the unknown
Differential gene expression mechanisms ensure cellular differentiation and plasticity to
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
Long-range enhancer–promoter contacts in gene expression control
Spatiotemporal gene expression programmes are orchestrated by transcriptional
enhancers, which are key regulatory DNA elements that engage in physical contacts with …
enhancers, which are key regulatory DNA elements that engage in physical contacts with …
Transcription shapes 3D chromatin organization by interacting with loop extrusion
EJ Banigan, W Tang… - Proceedings of the …, 2023 - National Acad Sciences
Cohesin folds mammalian interphase chromosomes by extruding the chromatin fiber into
numerous loops.“Loop extrusion” can be impeded by chromatin-bound factors, such as …
numerous loops.“Loop extrusion” can be impeded by chromatin-bound factors, such as …
Loo** the genome with SMC complexes
SMC (structural maintenance of chromosomes) protein complexes are an evolutionarily
conserved family of motor proteins that hold sister chromatids together and fold genomes …
conserved family of motor proteins that hold sister chromatids together and fold genomes …
Complex multi-enhancer contacts captured by genome architecture map**
The organization of the genome in the nucleus and the interactions of genes with their
regulatory elements are key features of transcriptional control and their disruption can cause …
regulatory elements are key features of transcriptional control and their disruption can cause …
The 3D genome as moderator of chromosomal communication
Proper expression of genes requires communication with their regulatory elements that can
be located elsewhere along the chromosome. The physics of chromatin fibers imposes a …
be located elsewhere along the chromosome. The physics of chromatin fibers imposes a …
Enhancer regulation of transcriptional bursting parameters revealed by forced chromatin loo**
Mammalian genes transcribe RNA not continuously, but in bursts. Transcriptional output can
be modulated by altering burst fraction or burst size, but how regulatory elements control …
be modulated by altering burst fraction or burst size, but how regulatory elements control …
Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome
Abstract We present Micro-C XL, an improved method for analysis of chromosome folding at
mononucleosome resolution. Using long crosslinkers and isolation of insoluble chromatin …
mononucleosome resolution. Using long crosslinkers and isolation of insoluble chromatin …
Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II, and Pol III
Y Jiang, J Huang, K Lun, B Li, H Zheng, Y Li, R Zhou… - Genome biology, 2020 - Springer
Background The relationship between transcription and the 3D chromatin structure is
debated. Multiple studies have shown that transcription affects global Cohesin binding and …
debated. Multiple studies have shown that transcription affects global Cohesin binding and …
High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcription
A Bressin, O Jasnovidova, M Arnold… - Nature …, 2023 - nature.com
Gene transcription by RNA polymerase II (Pol II) is under control of promoters and distal
regulatory elements known as enhancers. Enhancers are themselves transcribed by Pol II …
regulatory elements known as enhancers. Enhancers are themselves transcribed by Pol II …