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What are fungal species and how to delineate them?
This is the opening paper in the special issue of Fungal Diversity, which collates the data on
defining species. Defining and recognizing species has long been a controversial issue …
defining species. Defining and recognizing species has long been a controversial issue …
Integrative approaches for species delimitation in Ascomycota
Biodiversity loss from disturbances caused by human activities means that species are
disappearing at an ever increasing rate. The high number of species that have yet to be …
disappearing at an ever increasing rate. The high number of species that have yet to be …
ASAP: assemble species by automatic partitioning
N Puillandre, S Brouillet, G Achaz - Molecular Ecology …, 2021 - Wiley Online Library
Abstract Here, we describe Assemble Species by Automatic Partitioning (ASAP), a new
method to build species partitions from single locus sequence alignments (ie, barcode data …
method to build species partitions from single locus sequence alignments (ie, barcode data …
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo
Motivation In recent years, molecular species delimitation has become a routine approach
for quantifying and classifying biodiversity. Barcoding methods are of particular importance …
for quantifying and classifying biodiversity. Barcoding methods are of particular importance …
Comparison of methods for molecular species delimitation across a range of speciation scenarios
Species are fundamental units in biological research and can be defined on the basis of
various operational criteria. There has been growing use of molecular approaches for …
various operational criteria. There has been growing use of molecular approaches for …
[PDF][PDF] Classifying the evolutionary and ecological features of neoplasms
Neoplasms change over time through a process of cell-level evolution, driven by genetic
and epigenetic alterations. However, the ecology of the microenvironment of a neoplastic …
and epigenetic alterations. However, the ecology of the microenvironment of a neoplastic …
Investigating species boundaries in Colletotrichum
Colletotrichum is one of the most important plant pathogenic genera that is responsible for
numerous diseases which can have a profound impact on the agricultural sector. Species …
numerous diseases which can have a profound impact on the agricultural sector. Species …
A general species delimitation method with applications to phylogenetic placements
Motivation: Sequence-based methods to delimit species are central to DNA taxonomy,
microbial community surveys and DNA metabarcoding studies. Current approaches either …
microbial community surveys and DNA metabarcoding studies. Current approaches either …
[HTML][HTML] Recognition of seven species in the Cryptococcus gattii/Cryptococcus neoformans species complex
Phylogenetic analysis of 11 genetic loci and results from many genoty** studies revealed
significant genetic diversity with the pathogenic Cryptococcus gattii/Cryptococcus …
significant genetic diversity with the pathogenic Cryptococcus gattii/Cryptococcus …
Species in lichen-forming fungi: balancing between conceptual and practical considerations, and between phenotype and phylogenomics
Lichens are symbiotic associations resulting from interactions among fungi (primary and
secondary mycobionts), algae and/or cyanobacteria (primary and secondary photobionts) …
secondary mycobionts), algae and/or cyanobacteria (primary and secondary photobionts) …