Plant small RNAs: their biogenesis, regulatory roles, and functions

J Zhan, BC Meyers - Annual Review of Plant Biology, 2023 - annualreviews.org
Plant cells accumulate small RNA molecules that regulate plant development, genome
stability, and environmental responses. These small RNAs fall into three major classes …

Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics

PA Crisp, D Ganguly, SR Eichten, JO Borevitz… - Science …, 2016 - science.org
Plants grow in dynamic environments where they can be exposed to a multitude of stressful
factors, all of which affect their development, yield, and, ultimately, reproductive success …

Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA

X Zhao, J Li, B Lian, H Gu, Y Li, Y Qi - Nature communications, 2018 - nature.com
Long non-coding RNAs (lncRNAs) have emerged as important regulators of gene
expression and plant development. Here, we identified 6,510 lncRNAs in Arabidopsis under …

Classification and comparison of small RNAs from plants

MJ Axtell - Annual review of plant biology, 2013 - annualreviews.org
Regulatory small RNAs, which range in size from 20 to 24 nucleotides, are ubiquitous
components of endogenous plant transcriptomes, as well as common responses to …

XRN 5′→ 3′ exoribonucleases: structure, mechanisms and functions

VK Nagarajan, CI Jones, SF Newbury… - Biochimica et Biophysica …, 2013 - Elsevier
The XRN family of 5′→ 3′ exoribonucleases is critical for ensuring the fidelity of cellular
RNA turnover in eukaryotes. Highly conserved across species, the family is typically …

Long noncoding RNA transcriptome of plants

J Liu, H Wang, NH Chua - Plant biotechnology journal, 2015 - Wiley Online Library
Since their discovery more than two decades ago, animal long noncoding RNA s (lnc RNA
s) have emerged as important regulators of many biological processes. Recently, a large …

A Rice cis-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness

M Jabnoune, D Secco, C Lecampion, C Robaglia… - The Plant …, 2013 - academic.oup.com
Abstract cis-natural antisense transcripts (cis-NATs) are widespread in plants and are often
associated with downregulation of their associated sense genes. We found that a cis-NAT …

Long noncoding RNAs responsive to Fusarium oxysporum infection in Arabidopsis thaliana

QH Zhu, S Stephen, J Taylor, CA Helliwell… - New …, 2014 - Wiley Online Library
Short noncoding RNA s have been demonstrated to play important roles in regulation of
gene expression and stress responses, but the repertoire and functions of long noncoding …

Genome-wide identification and functional prediction of cold and/or drought-responsive lncRNAs in cassava

S Li, X Yu, N Lei, Z Cheng, P Zhao, Y He, W Wang… - Scientific reports, 2017 - nature.com
Cold and drought stresses seriously affect cassava (Manihot esculenta) plant growth and
yield. Recently, long noncoding RNAs (lncRNAs) have emerged as key regulators of diverse …

Natural antisense transcripts of MIR398 genes suppress microR398 processing and attenuate plant thermotolerance

Y Li, X Li, J Yang, Y He - Nature Communications, 2020 - nature.com
MicroRNAs (miRNAs) and natural antisense transcripts (NATs) control many biological
processes and have been broadly applied for genetic manipulation of eukaryotic gene …