Current strategies to address data scarcity in artificial intelligence-based drug discovery: A comprehensive review

A Gangwal, A Ansari, I Ahmad, AK Azad… - Computers in Biology …, 2024‏ - Elsevier
Artificial intelligence (AI) has played a vital role in computer-aided drug design (CADD). This
development has been further accelerated with the increasing use of machine learning (ML) …

Scoring functions for protein-ligand binding affinity prediction using structure-based deep learning: a review

R Meli, GM Morris, PC Biggin - Frontiers in bioinformatics, 2022‏ - frontiersin.org
The rapid and accurate in silico prediction of protein-ligand binding free energies or binding
affinities has the potential to transform drug discovery. In recent years, there has been a …

Multi-modal molecule structure–text model for text-based retrieval and editing

S Liu, W Nie, C Wang, J Lu, Z Qiao, L Liu… - Nature Machine …, 2023‏ - nature.com
There is increasing adoption of artificial intelligence in drug discovery. However, existing
studies use machine learning to mainly utilize the chemical structures of molecules but …

Artificial intelligence for science in quantum, atomistic, and continuum systems

X Zhang, L Wang, J Helwig, Y Luo, C Fu, Y **e… - arxiv preprint arxiv …, 2023‏ - arxiv.org
Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …

Learning substructure invariance for out-of-distribution molecular representations

N Yang, K Zeng, Q Wu, X Jia… - Advances in Neural …, 2022‏ - proceedings.neurips.cc
Molecule representation learning (MRL) has been extensively studied and current methods
have shown promising power for various tasks, eg, molecular property prediction and target …

Good: A graph out-of-distribution benchmark

S Gui, X Li, L Wang, S Ji - Advances in Neural Information …, 2022‏ - proceedings.neurips.cc
Abstract Out-of-distribution (OOD) learning deals with scenarios in which training and test
data follow different distributions. Although general OOD problems have been intensively …

A survey of graph neural networks in real world: Imbalance, noise, privacy and ood challenges

W Ju, S Yi, Y Wang, Z **ao, Z Mao, H Li, Y Gu… - arxiv preprint arxiv …, 2024‏ - arxiv.org
Graph-structured data exhibits universality and widespread applicability across diverse
domains, such as social network analysis, biochemistry, financial fraud detection, and …

Learning causally invariant representations for out-of-distribution generalization on graphs

Y Chen, Y Zhang, Y Bian, H Yang… - Advances in …, 2022‏ - proceedings.neurips.cc
Despite recent success in using the invariance principle for out-of-distribution (OOD)
generalization on Euclidean data (eg, images), studies on graph data are still limited …

Does invariant graph learning via environment augmentation learn invariance?

Y Chen, Y Bian, K Zhou, B **e… - Advances in Neural …, 2023‏ - proceedings.neurips.cc
Invariant graph representation learning aims to learn the invariance among data from
different environments for out-of-distribution generalization on graphs. As the graph …

Joint learning of label and environment causal independence for graph out-of-distribution generalization

S Gui, M Liu, X Li, Y Luo, S Ji - Advances in Neural …, 2023‏ - proceedings.neurips.cc
We tackle the problem of graph out-of-distribution (OOD) generalization. Existing graph OOD
algorithms either rely on restricted assumptions or fail to exploit environment information in …