Response of cells and tissues to shear stress

JA Espina, MH Cordeiro, M Milivojevic… - Journal of Cell …, 2023 - journals.biologists.com
Shear stress is essential for normal physiology and malignancy. Common physiological
processes–such as blood flow, particle flow in the gut, or contact between migratory cell …

Harnessing computational spatial omics to explore the spatial biology intricacies

Z Yuan, J Yao - Seminars in Cancer Biology, 2023 - Elsevier
Spatially resolved transcriptomics (SRT) has unlocked new dimensions in our
understanding of intricate tissue architectures. However, this rapidly expanding field …

Domain generalization enables general cancer cell annotation in single-cell and spatial transcriptomics

Z Zhong, J Hou, Z Yao, L Dong, F Liu, J Yue… - Nature …, 2024 - nature.com
Single-cell and spatial transcriptome sequencing, two recently optimized transcriptome
sequencing methods, are increasingly used to study cancer and related diseases. Cell …

Rebuilding the microenvironment of primary tumors in humans: a focus on stroma

S Mun, HJ Lee, P Kim - Experimental & Molecular Medicine, 2024 - nature.com
Conventional tumor models have critical shortcomings in that they lack the complexity of the
human stroma. The heterogeneous stroma is a central compartment of the tumor …

Spatially resolved transcriptomics technology facilitates cancer research

Q Wang, Y Zhi, M Zi, Y Mo, Y Wang, Q Liao… - Advanced …, 2023 - Wiley Online Library
Single cell RNA sequencing (scRNA‐seq) provides a great convenience for studying tumor
occurrence and development for its ability to study gene expression at the individual cell …

Spatial transcriptomics in development and disease

R Zhou, G Yang, Y Zhang, Y Wang - Molecular Biomedicine, 2023 - Springer
The proper functioning of diverse biological systems depends on the spatial organization of
their cells, a critical factor for biological processes like sha** intricate tissue functions and …

DAB2+ macrophages support FAP+ fibroblasts in sha** tumor barrier and inducing poor clinical outcomes in liver cancer

F Long, W Zhong, F Zhao, Y Xu, X Hu, G Jia… - …, 2024 - pmc.ncbi.nlm.nih.gov
Background: Cancer-associated fibroblasts (CAFs) are the key components of the immune
barrier in liver cancer. Therefore, gaining a deeper understanding of the heterogeneity and …

SpottedPy quantifies relationships between spatial transcriptomic hotspots and uncovers environmental cues of epithelial-mesenchymal plasticity in breast cancer

E Withnell, M Secrier - Genome Biology, 2024 - Springer
Spatial transcriptomics is revolutionizing the exploration of intratissue heterogeneity in
cancer, yet capturing cellular niches and their spatial relationships remains challenging. We …

Integration of pan-cancer single-cell and spatial transcriptomics reveals stromal cell features and therapeutic targets in tumor microenvironment

Y Du, J Shi, J Wang, Z Xun, Z Yu, H Sun, R Bao… - Cancer Research, 2024 - AACR
Stromal cells are physiologically essential components of the tumor microenvironment
(TME) that mediates tumor development and therapeutic resistance. Development of a …

Single‐cell and spatial omics unravel the spatiotemporal biology of tumour border invasion and haematogenous metastasis

X Cheng, Y Cao, X Liu, Y Li, Q Li… - Clinical and …, 2024 - Wiley Online Library
Solid tumours exhibit a well‐defined architecture, comprising a differentiated core and a
dynamic border that interfaces with the surrounding tissue. This border, characterised by …