Impact of the Human Cell Atlas on medicine

JE Rood, A Maartens, A Hupalowska, SA Teichmann… - Nature medicine, 2022 - nature.com
Single-cell atlases promise to provide a 'missing link'between genes, diseases and
therapies. By identifying the specific cell types, states, programs and contexts where disease …

Applications of multi‐omics analysis in human diseases

C Chen, J Wang, D Pan, X Wang, Y Xu, J Yan… - MedComm, 2023 - Wiley Online Library
Multi‐omics usually refers to the crossover application of multiple high‐throughput screening
technologies represented by genomics, transcriptomics, single‐cell transcriptomics …

hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data

S Morabito, F Reese, N Rahimzadeh, E Miyoshi… - Cell reports …, 2023 - cell.com
Biological systems are immensely complex, organized into a multi-scale hierarchy of
functional units based on tightly regulated interactions between distinct molecules, cells …

MEG3 activates necroptosis in human neuron xenografts modeling Alzheimer's disease

S Balusu, K Horré, N Thrupp, K Craessaerts, A Snellinx… - Science, 2023 - science.org
Neuronal cell loss is a defining feature of Alzheimer's disease (AD), but the underlying
mechanisms remain unclear. We xenografted human or mouse neurons into the brain of a …

New insights into the genetic etiology of Alzheimer's disease and related dementias

C Bellenguez, F Küçükali, IE Jansen, L Kleineidam… - Nature …, 2022 - nature.com
Abstract Characterization of the genetic landscape of Alzheimer's disease (AD) and related
dementias (ADD) provides a unique opportunity for a better understanding of the associated …

Single-nucleus chromatin accessibility and transcriptomic characterization of Alzheimer's disease

S Morabito, E Miyoshi, N Michael, S Shahin… - Nature …, 2021 - nature.com
The gene-regulatory landscape of the brain is highly dynamic in health and disease,
coordinating a menagerie of biological processes across distinct cell types. Here, we …

Updates on mouse models of Alzheimer's disease

MZ Zhong, T Peng, ML Duarte, M Wang… - Molecular …, 2024 - Springer
Alzheimer's disease (AD) is the most common neurodegenerative disease in the United
States (US). Animal models, specifically mouse models have been developed to better …

Cellular communities reveal trajectories of brain ageing and Alzheimer's disease

GS Green, M Fujita, HS Yang, M Taga, A Cain… - Nature, 2024 - nature.com
Alzheimer's disease (AD) has recently been associated with diverse cell states,,,,,,,,,–, yet
when and how these states affect the onset of AD remains unclear. Here we used a data …

[HTML][HTML] Spatial transcriptomics and in situ sequencing to study Alzheimer's disease

WT Chen, A Lu, K Craessaerts, B Pavie, CS Frigerio… - Cell, 2020 - cell.com
Although complex inflammatory-like alterations are observed around the amyloid plaques of
Alzheimer's disease (AD), little is known about the molecular changes and cellular …

Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings

A Sasse, B Ng, AE Spiro, S Tasaki, DA Bennett… - Nature …, 2023 - nature.com
Deep learning methods have recently become the state of the art in a variety of regulatory
genomic tasks,,,,–, including the prediction of gene expression from genomic DNA. As such …