Protein flexibility and stiffness enable efficient enzymatic catalysis

JP Richard - Journal of the American Chemical Society, 2019 - ACS Publications
The enormous rate accelerations observed for many enzyme catalysts are due to strong
stabilizing interactions between the protein and reaction transition state. The defining …

Exploring the reversal of enantioselectivity on a zinc-dependent alcohol dehydrogenase

MA Maria-Solano, A Romero-Rivera… - Organic & Biomolecular …, 2017 - pubs.rsc.org
Alcohol Dehydrogenase (ADH) enzymes catalyse the reversible reduction of prochiral
ketones to the corresponding alcohols. These enzymes present two differently shaped active …

Kinetic isotope effects as a probe of hydrogen transfers to and from common enzymatic cofactors

D Roston, Z Islam, A Kohen - Archives of biochemistry and biophysics, 2014 - Elsevier
Enzymes use a number of common cofactors as sources of hydrogen to drive biological
processes, but the physics of the hydrogen transfers to and from these cofactors is not fully …

Solvent Effects on the Temperature Dependence of Hydride Kinetic Isotope Effects: Correlation to the Donor–Acceptor Distances

P Adhikari, M Song, M Bai, P Rijal… - The Journal of …, 2022 - ACS Publications
Protein structural effects on the temperature (T) dependence of kinetic isotope effects (KIEs)
in H-tunneling reactions have recently been used to discuss about the role of enzyme …

Leaving group ability observably affects transition state structure in a single enzyme active site

D Roston, D Demapan, Q Cui - Journal of the American Chemical …, 2016 - ACS Publications
A reaction's transition state (TS) structure plays a critical role in determining reactivity and
has important implications for the design of catalysts, drugs, and other applications. Here …

Effects of macromolecular crowding on alcohol dehydrogenase activity are substrate-dependent

AE Wilcox, MA LoConte, KM Slade - Biochemistry, 2016 - ACS Publications
Enzymes operate in a densely packed cellular environment that rarely matches the dilute
conditions under which they are studied. To better understand the ramifications of this …

Substrate and transition state binding in alkaline phosphatase analyzed by computation of oxygen isotope effects

D Roston, Q Cui - Journal of the American Chemical Society, 2016 - ACS Publications
Enzymes are powerful catalysts, and a thorough understanding of the sources of their
catalytic power will facilitate many medical and industrial applications. Here we have studied …

Hydride transfer mechanism of enzymatic sugar nucleotide C2 epimerization probed with a loose-fit CDP-glucose substrate

C Rapp, B Nidetzky - Acs Catalysis, 2022 - ACS Publications
Transient oxidation–reduction through hydride transfer with tightly bound NAD coenzyme is
used by a large class of sugar nucleotide epimerases to promote configurational inversion of …

Computational Evidence for Tunneling and a Hidden Intermediate in the Biosynthesis of Tetrahydrocannabinol

EM Greer, V Siev, A Segal, A Greer… - Journal of the …, 2022 - ACS Publications
Quantum tunneling is computed for a reaction sequence that models the conversion of the
ortho-quinone methide of cannabigerolic acid 1 to the decarboxylated product (−)-trans-Δ9 …

Replication of the Enzymatic Temperature Dependency of the Primary Hydride Kinetic Isotope Effects in Solution: Caused by the Protein-Controlled Rigidity of the …

Y Lu, S Wilhelm, M Bai, P Maness, L Ma - Biochemistry, 2019 - ACS Publications
The change from the temperature independence of the primary (1°) H/D kinetic isotope
effects (KIEs) in wild-type enzyme-catalyzed H-transfer reactions (Δ E a= E aD–E aH∼ 0) to …