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Enhancer selectivity in space and time: from enhancer–promoter interactions to promoter activation
The primary regulators of metazoan gene expression are enhancers, originally functionally
defined as DNA sequences that can activate transcription at promoters in an orientation …
defined as DNA sequences that can activate transcription at promoters in an orientation …
The self-organizing genome: principles of genome architecture and function
T Misteli - Cell, 2020 - cell.com
Genomes have complex three-dimensional architectures. The recent convergence of
genetic, biochemical, biophysical, and cell biological methods has uncovered several …
genetic, biochemical, biophysical, and cell biological methods has uncovered several …
[HTML][HTML] Condensed chromatin behaves like a solid on the mesoscale in vitro and in living cells
The association of nuclear DNA with histones to form chromatin is essential for temporal and
spatial control of eukaryotic genomes. In this study, we examined the physical state of …
spatial control of eukaryotic genomes. In this study, we examined the physical state of …
Toward quantitative bio-sensing with nitrogen–vacancy center in diamond
The long-dreamed-of capability of monitoring the molecular machinery in living systems has
not been realized yet, mainly due to the technical limitations of current sensing technologies …
not been realized yet, mainly due to the technical limitations of current sensing technologies …
Structural variations in cancer and the 3D genome
Structural variations (SVs) affect more of the cancer genome than any other type of somatic
genetic alteration but difficulties in detecting and interpreting them have limited our …
genetic alteration but difficulties in detecting and interpreting them have limited our …
CRISPR/Cas9 in genome editing and beyond
The Cas9 protein (CRISPR-associated protein 9), derived from type II CRISPR (clustered
regularly interspaced short palindromic repeats) bacterial immune systems, is emerging as a …
regularly interspaced short palindromic repeats) bacterial immune systems, is emerging as a …
Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity
Enhancers are important regulatory elements that can control gene activity across vast
genetic distances. However, the underlying nature of this regulation remains obscured …
genetic distances. However, the underlying nature of this regulation remains obscured …
Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements
To achieve guide RNA (gRNA) multiplexing and an efficient delivery of tens of distinct
gRNAs into single cells, we developed a molecular assembly strategy termed chimeric array …
gRNAs into single cells, we developed a molecular assembly strategy termed chimeric array …
HP1 proteins compact DNA into mechanically and positionally stable phase separated domains
In mammals, HP1-mediated heterochromatin forms positionally and mechanically stable
genomic domains even though the component HP1 paralogs, HP1α, HP1β, and HP1γ …
genomic domains even though the component HP1 paralogs, HP1α, HP1β, and HP1γ …
Chromatin and nucleosome dynamics in DNA damage and repair
Chromatin is organized into higher-order structures that form subcompartments in
interphase nuclei. Different categories of specialized enzymes act on chromatin and …
interphase nuclei. Different categories of specialized enzymes act on chromatin and …