Ontologies have long been employed in the life sciences to formally represent and reason
over domain knowledge and they are employed in almost every major biological database …

Abstract Interleukin (IL)-6 elicits both anticancer and procancer effects depending on the
context, which we have termed the 'exercise IL-6 enigma'. IL-6 is released from skeletal …

Motivation Creating knowledge bases and ontologies is a time consuming task that relies on
manual curation. AI/NLP approaches can assist expert curators in populating these …

Abstract The Research Electronic Data Capture (REDCap) data management platform was
developed in 2004 to address an institutional need at Vanderbilt University, then shared with …

Biological ontologies are used to organize, curate and interpret the vast quantities of data
arising from biological experiments. While this works well when using a single ontology …

WikiPathways (wikipathways. org) captures the collective knowledge represented in
biological pathways. By providing a database in a curated, machine readable way, omics …

Microbial metabolism powers biogeochemical cycling in Earth's ecosystems. The taxonomic
composition of microbial communities varies substantially between environments, but the …

OMA is an established resource to elucidate evolutionary relationships among genes from
currently 2326 genomes covering all domains of life. OMA provides pairwise and groupwise …

Abstract The National Human Genome Research Institute (NHGRI) Catalog of Published
Genome-Wide Association Studies (GWAS) Catalog provides a publicly available manually …

To develop a map of cell-cell communication mediated by extracellular RNA (exRNA), the
NIH Extracellular RNA Communication Consortium created the exRNA Atlas resource …