Predicting evolution

M Lässig, V Mustonen, AM Walczak - Nature ecology & evolution, 2017 - nature.com
The face of evolutionary biology is changing: from reconstructing and analysing the past to
predicting future evolutionary processes. Recent developments include prediction of …

Experimental design, population dynamics, and diversity in microbial experimental evolution

B Van den Bergh, T Swings, M Fauvart… - … and Molecular Biology …, 2018 - journals.asm.org
In experimental evolution, laboratory-controlled conditions select for the adaptation of
species, which can be monitored in real time. Despite the current popularity of such …

Clinically relevant mutations in core metabolic genes confer antibiotic resistance

AJ Lopatkin, SC Bening, AL Manson, JM Stokes… - Science, 2021 - science.org
Although metabolism plays an active role in antibiotic lethality, antibiotic resistance is
generally associated with drug target modification, enzymatic inactivation, and/or transport …

Scalable, continuous evolution of genes at mutation rates above genomic error thresholds

A Ravikumar, GA Arzumanyan, MKA Obadi… - Cell, 2018 - cell.com
Directed evolution is a powerful approach for engineering biomolecules and understanding
adaptation. However, experimental strategies for directed evolution are notoriously labor …

Quantitative evolutionary dynamics using high-resolution lineage tracking

SF Levy, JR Blundell, S Venkataram, DA Petrov… - Nature, 2015 - nature.com
Evolution of large asexual cell populations underlies∼ 30% of deaths worldwide, including
those caused by bacteria, fungi, parasites, and cancer. However, the dynamics underlying …

Sex speeds adaptation by altering the dynamics of molecular evolution

MJ McDonald, DP Rice, MM Desai - Nature, 2016 - nature.com
Sex and recombination are pervasive throughout nature despite their substantial costs.
Understanding the evolutionary forces that maintain these phenomena is a central …

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

GI Lang, DP Rice, MJ Hickman, E Sodergren… - Nature, 2013 - nature.com
The dynamics of adaptation determine which mutations fix in a population, and hence how
reproducible evolution will be. This is central to understanding the spectra of mutations …

Global epistasis makes adaptation predictable despite sequence-level stochasticity

S Kryazhimskiy, DP Rice, ER Jerison, MM Desai - Science, 2014 - science.org
Epistatic interactions between mutations can make evolutionary trajectories contingent on
the chance occurrence of initial mutations. We used experimental evolution in …

Genomic signatures of selection at linked sites: unifying the disparity among species

AD Cutter, BA Payseur - Nature Reviews Genetics, 2013 - nature.com
Population genetics theory supplies powerful predictions about how natural selection
interacts with genetic linkage to sculpt the genomic landscape of nucleotide polymorphism …

Population size and the rate of evolution

R Lanfear, H Kokko, A Eyre-Walker - Trends in ecology & evolution, 2014 - cell.com
Does evolution proceed faster in larger or smaller populations? The relationship between
effective population size (N e) and the rate of evolution has consequences for our ability to …