Lisa: Learned indexes for DNA sequence analysis

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Accelerating minimap2 for long-read sequencing applications on modern CPUs

S Kalikar, C Jain, M Vasimuddin, S Misra - Nature Computational …, 2022 - nature.com
Long-read sequencing is now routinely used at scale for genomics and transcriptomics
applications. Map** long reads or a draft genome assembly to a reference sequence is …
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Accelerating long-read analysis on modern CPUs

S Kalikar, C Jain, V Md, S Misra - BioRxiv, 2021 - biorxiv.org
Long read sequencing is now routinely used at scale for genomics and transcriptomics
applications. Map** of long reads or a draft genome assembly to a reference sequence is …
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