Acetate metabolism and the inhibition of bacterial growth by acetate
During aerobic growth on glucose, Escherichia coli excretes acetate, a mechanism called
“overflow metabolism.” At high concentrations, the secreted acetate inhibits growth. Several …
“overflow metabolism.” At high concentrations, the secreted acetate inhibits growth. Several …
Shared control of gene expression in bacteria by transcription factors and global physiology of the cell
S Berthoumieux, H De Jong, G Baptist… - Molecular systems …, 2013 - embopress.org
Gene expression is controlled by the joint effect of (i) the global physiological state of the
cell, in particular the activity of the gene expression machinery, and (ii) DNA‐binding …
cell, in particular the activity of the gene expression machinery, and (ii) DNA‐binding …
Characterization of flavin-based fluorescent proteins: an emerging class of fluorescent reporters
Fluorescent reporter proteins based on flavin-binding photosensors were recently
developed as a new class of genetically encoded probes characterized by small size and …
developed as a new class of genetically encoded probes characterized by small size and …
A versatile microfluidic device for automating synthetic biology
New microbes are being engineered that contain the genetic circuitry, metabolic pathways,
and other cellular functions required for a wide range of applications such as producing …
and other cellular functions required for a wide range of applications such as producing …
A synthetic growth switch based on controlled expression of RNA polymerase
J Izard, CDC Gomez Balderas, D Ropers… - Molecular systems …, 2015 - embopress.org
The ability to control growth is essential for fundamental studies of bacterial physiology and
biotechnological applications. We have engineered an Escherichia coli strain in which the …
biotechnological applications. We have engineered an Escherichia coli strain in which the …
Repression of flagellar genes in exponential phase by CsgD and CpxR, two crucial modulators of Escherichia coli biofilm formation
Escherichia coli adapts its lifestyle to the variations of environmental growth conditions,
swap** between swimming motility or biofilm formation. The stationary-phase sigma factor …
swap** between swimming motility or biofilm formation. The stationary-phase sigma factor …
Glucose-dependent promoters for dynamic regulation of metabolic pathways
For an industrial fermentation process, it can be advantageous to decouple cell growth from
product formation. This decoupling would allow for the rapid accumulation of biomass …
product formation. This decoupling would allow for the rapid accumulation of biomass …
Bistable expression of a toxin-antitoxin system located in a cryptic prophage of Escherichia coli O157: H7
Type II toxin-antitoxin (TA) systems are classically composed of two genes that encode a
toxic protein and a cognate antitoxin protein. Both genes are organized in an operon whose …
toxic protein and a cognate antitoxin protein. Both genes are organized in an operon whose …
Characterization of intrinsic properties of promoters
Accurate characterization of promoter behavior is essential for the rational design of
functional synthetic transcription networks such as logic gates and oscillators. However …
functional synthetic transcription networks such as logic gates and oscillators. However …
Unmixing of fluorescence spectra to resolve quantitative time-series measurements of gene expression in plate readers
Background To connect gene expression with cellular physiology, we need to follow levels
of proteins over time. Experiments typically use variants of Green Fluorescent Protein (GFP) …
of proteins over time. Experiments typically use variants of Green Fluorescent Protein (GFP) …