PEL-PVP: application of plant vacuolar protein discriminator based on PEFT ESM-2 and bilayer LSTM in an unbalanced dataset

C **ao, Z Zhou, J She, J Yin, F Cui, Z Zhang - International Journal of …, 2024 - Elsevier
Plant vacuoles, play a crucial role in maintaining cellular stability, adapting to environmental
changes, and responding to external pressures. The accurate identification of vacuolar …

DPNN-ac4C: a dual-path neural network with self-attention mechanism for identification of N4-acetylcytidine (ac4C) in mRNA

J Yuan, Z Wang, Z Pan, A Li, Z Zhang, F Cui - Bioinformatics, 2024 - academic.oup.com
Motivation The modification of N4-acetylcytidine (ac4C) in RNA is a conserved epigenetic
mark that plays a crucial role in post-transcriptional regulation, mRNA stability, and …

MultiFeatVotPIP: a voting-based ensemble learning framework for predicting proinflammatory peptides

C Yan, A Geng, Z Pan, Z Zhang… - Briefings in …, 2024 - academic.oup.com
Inflammatory responses may lead to tissue or organ damage, and proinflammatory peptides
(PIPs) are signaling peptides that can induce such responses. Many diseases have been …

Hyb_SEnc: An Antituberculosis peptide predictor based on a hybrid feature vector and stacked ensemble learning

X Fu, X Zang, C Liu, X Li, Q Zhang… - IEEE/ACM …, 2024 - ieeexplore.ieee.org
Tuberculosis has plagued mankind since ancient times, and the struggle between humans
and tuberculosis continues. Mycobacterium tuberculosis is the leading cause of …

msBERT-Promoter: a multi-scale ensemble predictor based on BERT pre-trained model for the two-stage prediction of DNA promoters and their strengths

Y Li, X Wei, Q Yang, A **ong, X Li, Q Zou, F Cui… - BMC biology, 2024 - Springer
Background A promoter is a specific sequence in DNA that has transcriptional regulatory
functions, playing a role in initiating gene expression. Identifying promoters and their …