Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA

C Simon, TR Buckley, F Frati, JB Stewart… - Annu. Rev. Ecol …, 2006 - annualreviews.org
DNA data has been widely used in animal phylogenetic studies over the past 15 years. Here
we review how these studies have used advances in knowledge of molecular evolutionary …

Recent advances in the (molecular) phylogeny of vertebrates

A Meyer, R Zardoya - Annual Review of Ecology, Evolution, and …, 2003 - annualreviews.org
▪ Abstract The analysis of molecular phylogenetic data has advanced the knowledge of the
relationships among the major groups of living vertebrates. Whereas the molecular …

Best practices for justifying fossil calibrations

JF Parham, PCJ Donoghue, CJ Bell… - Systematic …, 2012 - academic.oup.com
Our ability to correlate biological evolution with climate change, geological evolution, and
other historical patterns is essential to understanding the processes that shape biodiversity …

A phylogenomic study of birds reveals their evolutionary history

SJ Hackett, RT Kimball, S Reddy, RCK Bowie… - science, 2008 - science.org
Deep avian evolutionary relationships have been difficult to resolve as a result of a putative
explosive radiation. Our study examined∼ 32 kilobases of aligned nuclear DNA sequences …

[KİTAP][B] Vertebrate palaeontology

MJ Benton - 2014 - books.google.com
Vertebrate palaeontology is a lively field, with new discoveries reported every week... and
not only dinosaurs! This new edition reflects the international scope of vertebrate …

Paleogene fossil birds

G Mayr, Mayr - 2009 - Springer
The first edition of this book was written at a time when comprehensive analyses of
molecular sequence data just began to provide a robust framework for the interrelationships …

Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy. II. Analysis and discussion

BC Livezey, RL Zusi - Zoological journal of the Linnean Society, 2007 - academic.oup.com
In recent years, avian systematics has been characterized by a diminished reliance on
morphological cladistics of modern taxa, intensive palaeornithogical research stimulated by …

The prevalence and impact of model violations in phylogenetic analysis

S Naser-Khdour, BQ Minh, W Zhang… - Genome biology and …, 2019 - academic.oup.com
In phylogenetic inference, we commonly use models of substitution which assume that
sequence evolution is stationary, reversible, and homogeneous (SRH). Although the use of …

Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders

MA Pacheco, FU Battistuzzi, M Lentino… - Molecular Biology …, 2011 - academic.oup.com
Mitochondrial (mt) genes and genomes are among the major sources of data for
evolutionary studies in birds. This places mitogenomic studies in birds at the core of intense …

Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution

KE Slack, CM Jones, T Ando… - Molecular biology …, 2006 - academic.oup.com
Testing models of macroevolution, and especially the sufficiency of microevolutionary
processes, requires good collaboration between molecular biologists and paleontologists …