Recurrent topics in mass spectrometry-based metabolomics and lipidomics—standardization, coverage, and throughput

E Rampler, YE Abiead, H Schoeny, M Rusz… - Analytical …, 2020 - ACS Publications
We have come a long way in the last years of develo** analytical strategies in
metabolomics. We have seen huge progress in tackling multiplatform measurement, data …

Network analyses in microbiome based on high-throughput multi-omics data

Z Liu, A Ma, E Mathé, M Merling, Q Ma… - Briefings in …, 2021 - academic.oup.com
Together with various hosts and environments, ubiquitous microbes interact closely with
each other forming an intertwined system or community. Of interest, shifts of the relationships …

A metabolomic profile of biological aging in 250,341 individuals from the UK Biobank

S Zhang, Z Wang, Y Wang, Y Zhu, Q Zhou… - Nature …, 2024 - nature.com
The metabolomic profile of aging is complex. Here, we analyse 325 nuclear magnetic
resonance (NMR) biomarkers from 250,341 UK Biobank participants, identifying 54 …

Microbiome and metabolomics in liver cancer: scientific technology

R Ganesan, SJ Yoon, KT Suk - International Journal of Molecular …, 2022 - mdpi.com
Primary liver cancer is a heterogeneous disease. Liver cancer metabolism includes both the
reprogramming of intracellular metabolism to enable cancer cells to proliferate …

Integration of enzyme constraints in a genome-scale metabolic model of Aspergillus niger improves phenotype predictions

J Zhou, Y Zhuang, J **a - Microbial Cell Factories, 2021 - Springer
Background Genome-scale metabolic model (GSMM) is a powerful tool for the study of
cellular metabolic characteristics. With the development of multi-omics measurement …

Inter-study and time-dependent variability of metabolite abundance in cultured red blood cells

SG Tewari, K Rajaram, RP Swift, B Kwan, J Reifman… - Malaria journal, 2021 - Springer
Background Cultured human red blood cells (RBCs) provide a powerful ex vivo assay
platform to study blood-stage malaria infection and propagation. In recent years, high …

[HTML][HTML] Seeing the forest for the trees: Retrieving plant secondary biochemical pathways from metabolome networks

S Desmet, M Brouckaert, W Boerjan… - Computational and …, 2021 - Elsevier
Over the last decade, a giant leap forward has been made in resolving the main bottleneck
in metabolomics, ie, the structural characterization of the many unknowns. This has led to …

A pH-responsive Fe, Co, P-CDs hydrogel compound and its application in visual assessment of aquatic product freshness

D Zhao, D Liang, H Liu, X **ao - Microchemical Journal, 2025 - Elsevier
Hypoxanthine (Hx) and pH are important indicators for evaluating the freshness of aquatic
products, and their rapid assessment can maximize public food safety and minimize …

The systems biology simulation core library

H Panchiwala, S Shah, H Planatscher… - …, 2022 - academic.oup.com
Studying biological systems generally relies on computational modeling and simulation, eg,
model-driven discovery and hypothesis testing. Progress in standardization efforts led to the …

Metabolomic profiling of biolayers on the surface of marble in nature and urban environment. Case study of Karelia and St. Petersburg

KV Sazanova, MS Zelenskaya, OA Rodina… - Minerals, 2021 - mdpi.com
The formation of biolayers of various taxonomic and biochemical composition occurs on the
rock surfaces under various environmental conditions. The composition of metabolites in …