A comprehensive profile of circulating RNAs in human serum

SU Umu, H Langseth, C Bucher-Johannessen… - RNA biology, 2018 - Taylor & Francis
Non-coding RNA (ncRNA) molecules have fundamental roles in cells and many are also
stable in body fluids as extracellular RNAs. In this study, we used RNA sequencing (RNA …

GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences

JS Cumbie, JA Kimbrel, Y Di, DW Schafer, LJ Wilhelm… - PloS one, 2011 - journals.plos.org
GENE-counter is a complete Perl-based computational pipeline for analyzing RNA-
Sequencing (RNA-Seq) data for differential gene expression. In addition to its use in …

Use of digital gene expression to discriminate gene expression differences in early generations of resynthesized Brassica napus and its diploid progenitors

J Jiang, Y Shao, K Du, L Ran, X Fang, Y Wang - BMC genomics, 2013 - Springer
Background Polyploidy is an important evolutionary mechanism in flowering plants that often
induces immediate extensive changes in gene expression through genomic merging and …

IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles

X Shi, AF Neuwald, X Wang, TL Wang… - …, 2021 - academic.oup.com
Motivation High-throughput RNA sequencing has revolutionized the scope and depth of
transcriptome analysis. Accurate reconstruction of a phenotype-specific transcriptome is …

SVAPLSseq: A Method to correct for hidden sources of variability in differential gene expression studies based on RNAseq data

S Chakraborty - bioRxiv, 2016 - biorxiv.org
RNAseq technology has revolutionized the face of gene expression profiling by generating
read count data measuring the transcript abundances for each queried gene. But on the …

Preučevanje polarnosti različnih viroidov in njihovih kombinacij v okuženih rastlinah hmelja

A Sečnik - 2019 - repozitorij.uni-lj.si
AI Viroidi so majhne, visoko infektivne, enoverižne molekule RNA z izrazito sekundarno
strukturo. Njihovo preučevanje v okuženih rastlinah se v glavnem osredotoča na okužbe z …