Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

The expanding role of DNA barcodes: Indispensable tools for ecology, evolution, and conservation

MR Gostel, WJ Kress - Diversity, 2022 - mdpi.com
DNA barcoding has transformed the fields of ecology, evolution, and conservation by
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …

DNA barcoding of Cymbidium by genome skimming: Call for next‐generation nuclear barcodes

L Zhang, YW Huang, JL Huang, JD Ya… - Molecular Ecology …, 2023 - Wiley Online Library
Cymbidium is an orchid genus that has undergone rapid radiation and has high ornamental,
economic, ecological and cultural importance, but its classification based on morphology is …

Skimming genomes for systematics and DNA barcodes of corals

AM Quattrini, LJ McCartin, EE Easton… - Ecology and …, 2024 - Wiley Online Library
Numerous genomic methods developed over the past two decades have enabled the
discovery and extraction of orthologous loci to help resolve phylogenetic relationships …

DNA barcoding of fungal specimens using PacBio long‐read high‐throughput sequencing

K Runnel, K Abarenkov, O Copoț… - Molecular Ecology …, 2022 - Wiley Online Library
Molecular methods are increasingly used to identify species that lack conspicuous macro‐or
micromorphological characters. Taxonomic and ecological research teams barcode large …

Fast and accurate distance‐based phylogenetic placement using divide and conquer

M Balaban, Y Jiang, D Roush, Q Zhu… - Molecular Ecology …, 2022 - Wiley Online Library
Phylogenetic placement of query samples on an existing phylogeny is increasingly used in
molecular ecology, including sample identification and microbiome environmental sampling …

Using DNA metabarcoding to identify floral visitation by pollinators

A Lowe, L Jones, L Witter, S Creer, N de Vere - Diversity, 2022 - mdpi.com
The identification of floral visitation by pollinators provides an opportunity to improve our
understanding of the fine-scale ecological interactions between plants and pollinators …

The MetaInvert soil invertebrate genome resource provides insights into below-ground biodiversity and evolution

G Collins, C Schneider, LL Boštjančić… - Communications …, 2023 - nature.com
Soil invertebrates are among the least understood metazoans on Earth. Thus far, the lack of
taxonomically broad and dense genomic resources has made it hard to thoroughly …

Target capture and genome skimming for plant diversity studies

FF Pezzini, G Ferrari, LL Forrest, ML Hart… - Applications in Plant …, 2023 - Wiley Online Library
Recent technological advances in long‐read high‐throughput sequencing and assembly
methods have facilitated the generation of annotated chromosome‐scale whole‐genome …

Optimizing a metabarcoding marker portfolio for species detection from complex mixtures of globally diverse fishes

DS Baetscher, NS Locatelli, E Won… - Environmental …, 2023 - Wiley Online Library
DNA metabarcoding is used to enumerate and identify taxa in both environmental samples
and tissue mixtures, but the effectiveness of particular markers depends on their sensitivity to …