Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

M Chen, JL Manley - Nature reviews Molecular cell biology, 2009 - nature.com
Alternative splicing of mRNA precursors provides an important means of genetic control and
is a crucial step in the expression of most genes. Alternative splicing markedly affects human …

Splicing factor mutations and cancer

K Yoshida, S Ogawa - Wiley Interdisciplinary Reviews: RNA, 2014 - Wiley Online Library
Recent advances in high‐throughput sequencing technologies have unexpectedly revealed
that somatic mutations of splicing factor genes frequently occurred in several types of …

Cancer-associated SF3B1 mutations affect alternative splicing by promoting alternative branchpoint usage

S Alsafadi, A Houy, A Battistella, T Popova… - Nature …, 2016 - nature.com
Hotspot mutations in the spliceosome gene SF3B1 are reported in∼ 20% of uveal
melanomas. SF3B1 is involved in 3′-splice site (3′ ss) recognition during RNA splicing; …

Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes

TA Graubert, D Shen, L Ding, T Okeyo-Owuor… - Nature …, 2012 - nature.com
Myelodysplastic syndromes (MDS) are hematopoietic stem cell disorders that often progress
to chemotherapy-resistant secondary acute myeloid leukemia (sAML). We used whole …

Mechanisms for U2AF to define 3′ splice sites and regulate alternative splicing in the human genome

C Shao, B Yang, T Wu, J Huang, P Tang… - Nature structural & …, 2014 - nature.com
The U2AF heterodimer has been well studied for its role in defining functional 3′ splice
sites in pre-mRNA splicing, but many fundamental questions still remain unaddressed …

Rules and tools to predict the splicing effects of exonic and intronic mutations

K Ohno, J Takeda, A Masuda - Wiley Interdisciplinary Reviews …, 2018 - Wiley Online Library
Development of next generation sequencing technologies has enabled detection of
extensive arrays of germline and somatic single nucleotide variations (SNVs) in human …

U2AF1 mutations alter sequence specificity of pre-mRNA binding and splicing

T Okeyo-Owuor, BS White, R Chatrikhi, DR Mohan… - Leukemia, 2015 - nature.com
We previously identified missense mutations in the U2AF1 splicing factor affecting codons
S34 (S34F and S34Y) or Q157 (Q157R and Q157P) in 11% of the patients with de novo …

Tissue-specific splicing factor gene expression signatures

AR Grosso, AQ Gomes, NL Barbosa-Morais… - Nucleic acids …, 2008 - academic.oup.com
The alternative splicing code that controls and coordinates the transcriptome in complex
multicellular organisms remains poorly understood. It has long been argued that regulation …

Cotranscriptional exon skip** in the genotoxic stress response

M Dutertre, G Sanchez, MC De Cian, J Barbier… - Nature structural & …, 2010 - nature.com
Pre-mRNA splicing is functionally coupled to transcription, and genotoxic stresses can
enhance alternative exon inclusion by affecting elongating RNA polymerase II. We report …

CTD serine-2 plays a critical role in splicing and termination factor recruitment to RNA polymerase II in vivo

B Gu, D Eick, O Bensaude - Nucleic acids research, 2013 - academic.oup.com
Co-transcriptional pre-mRNA processing relies on reversible phosphorylation of the
carboxyl-terminal domain (CTD) of Rpb1, the largest subunit of RNA polymerase II (RNAP …