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Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches
Alternative splicing of mRNA precursors provides an important means of genetic control and
is a crucial step in the expression of most genes. Alternative splicing markedly affects human …
is a crucial step in the expression of most genes. Alternative splicing markedly affects human …
Splicing factor mutations and cancer
Recent advances in high‐throughput sequencing technologies have unexpectedly revealed
that somatic mutations of splicing factor genes frequently occurred in several types of …
that somatic mutations of splicing factor genes frequently occurred in several types of …
Cancer-associated SF3B1 mutations affect alternative splicing by promoting alternative branchpoint usage
Hotspot mutations in the spliceosome gene SF3B1 are reported in∼ 20% of uveal
melanomas. SF3B1 is involved in 3′-splice site (3′ ss) recognition during RNA splicing; …
melanomas. SF3B1 is involved in 3′-splice site (3′ ss) recognition during RNA splicing; …
Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes
Myelodysplastic syndromes (MDS) are hematopoietic stem cell disorders that often progress
to chemotherapy-resistant secondary acute myeloid leukemia (sAML). We used whole …
to chemotherapy-resistant secondary acute myeloid leukemia (sAML). We used whole …
Mechanisms for U2AF to define 3′ splice sites and regulate alternative splicing in the human genome
The U2AF heterodimer has been well studied for its role in defining functional 3′ splice
sites in pre-mRNA splicing, but many fundamental questions still remain unaddressed …
sites in pre-mRNA splicing, but many fundamental questions still remain unaddressed …
Rules and tools to predict the splicing effects of exonic and intronic mutations
K Ohno, J Takeda, A Masuda - Wiley Interdisciplinary Reviews …, 2018 - Wiley Online Library
Development of next generation sequencing technologies has enabled detection of
extensive arrays of germline and somatic single nucleotide variations (SNVs) in human …
extensive arrays of germline and somatic single nucleotide variations (SNVs) in human …
U2AF1 mutations alter sequence specificity of pre-mRNA binding and splicing
We previously identified missense mutations in the U2AF1 splicing factor affecting codons
S34 (S34F and S34Y) or Q157 (Q157R and Q157P) in 11% of the patients with de novo …
S34 (S34F and S34Y) or Q157 (Q157R and Q157P) in 11% of the patients with de novo …
Tissue-specific splicing factor gene expression signatures
The alternative splicing code that controls and coordinates the transcriptome in complex
multicellular organisms remains poorly understood. It has long been argued that regulation …
multicellular organisms remains poorly understood. It has long been argued that regulation …
Cotranscriptional exon skip** in the genotoxic stress response
M Dutertre, G Sanchez, MC De Cian, J Barbier… - Nature structural & …, 2010 - nature.com
Pre-mRNA splicing is functionally coupled to transcription, and genotoxic stresses can
enhance alternative exon inclusion by affecting elongating RNA polymerase II. We report …
enhance alternative exon inclusion by affecting elongating RNA polymerase II. We report …
CTD serine-2 plays a critical role in splicing and termination factor recruitment to RNA polymerase II in vivo
B Gu, D Eick, O Bensaude - Nucleic acids research, 2013 - academic.oup.com
Co-transcriptional pre-mRNA processing relies on reversible phosphorylation of the
carboxyl-terminal domain (CTD) of Rpb1, the largest subunit of RNA polymerase II (RNAP …
carboxyl-terminal domain (CTD) of Rpb1, the largest subunit of RNA polymerase II (RNAP …