[PDF][PDF] Machine learning predictor models in the electronic properties of alkanes based on degree-topology indices

ZM Zabidi, AN Alias, NA Zakaria… - Int. J. Emerg. Technol …, 2021 - academia.edu
New topology indices that are degree-based have been introduced to represent molecular
structure from chemical graph theory. The indices give a new sight into the physical …

An inverse QSAR method based on a two-layered model and integer programming

Y Shi, J Zhu, NA Azam, K Haraguchi, L Zhao… - International journal of …, 2021 - mdpi.com
A novel framework for inverse quantitative structure–activity relationships (inverse QSAR)
has recently been proposed and developed using both artificial neural networks and mixed …

A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming

NA Azam, J Zhu, Y Sun, Y Shi, A Shurbevski… - Algorithms for Molecular …, 2021 - Springer
Abstract Analysis of chemical graphs is becoming a major research topic in computational
molecular biology due to its potential applications to drug design. One of the major …

[HTML][HTML] A novel method for inference of chemical compounds of cycle index two with desired properties based on artificial neural networks and integer programming

J Zhu, C Wang, A Shurbevski, H Nagamochi, T Akutsu - Algorithms, 2020 - mdpi.com
Inference of chemical compounds with desired properties is important for drug design,
chemo-informatics, and bioinformatics, to which various algorithmic and machine learning …

Machine Learning Approaches to Improve Prediction of Target‐Drug Interactions

E Balatti, Galo, G Barletta, Patricio… - Drug Design Using …, 2022 - Wiley Online Library
From the initial steps of early drug discovery, the traditional techniques, like docking, QSAR,
or molecular dynamics, have been used for decades identifying targets, ranking molecule …

A novel method for inferring chemical compounds with prescribed topological substructures based on integer programming

J Zhu, NA Azam, F Zhang, A Shurbevski… - IEEE/ACM …, 2021 - ieeexplore.ieee.org
Drug discovery is one of the major goals of computational biology and bioinformatics. A
novel framework has recently been proposed for the design of chemical graphs using both …

A method for inferring polymers based on linear regression and integer programming

R Ido, S Cao, J Zhu, NA Azam… - IEEE/ACM …, 2024 - ieeexplore.ieee.org
A novel framework has recently been proposed for designing the molecular structure of
chemical compounds with a desired chemical property using both artificial neural networks …

An inverse QSAR method based on decision tree and integer programming

K Tanaka, J Zhu, NA Azam, K Haraguchi… - … on Intelligent Computing, 2021 - Springer
Recently a novel framework has been proposed for designing the molecular structure of
chemical compounds using both artificial neural networks (ANNs) and mixed integer linear …

Constructing extremal triangle-free graphs using integer programming

AE Banak, T Ekim, ZC Taşkın - Discrete Optimization, 2023 - Elsevier
The maximum number of edges in a graph with matching number m and maximum degree d
has been determined in Chvátal and Hanson (1976) and Balachandran and Khare (2009) …

Cycle-configuration: A novel graph-theoretic descriptor set for molecular inference

B Song, J Zhu, NA Azam, K Haraguchi… - 2024 IEEE …, 2024 - ieeexplore.ieee.org
In this paper, we propose a novel family of descriptors of chemical graphs, named cycle-
configuration (CC), that can be used in the standard" two-layered (2L) model" of mol-infer, a …