Nonlinear decision-making with enzymatic neural networks

S Okumura, G Gines, N Lobato-Dauzier, A Baccouche… - Nature, 2022 - nature.com
Artificial neural networks have revolutionized electronic computing. Similarly, molecular
networks with neuromorphic architectures may enable molecular decision-making on a level …

Pattern generation with nucleic acid chemical reaction networks

SS Wang, AD Ellington - Chemical Reviews, 2019 - ACS Publications
Biological and biochemical systems are manifestations of chemical reaction networks
(CRNs). The ability to design and engineer such networks may allow the construction of …

Microscopic agents programmed by DNA circuits

G Gines, AS Zadorin, JC Galas, T Fujii… - Nature …, 2017 - nature.com
Abstract Information stored in synthetic nucleic acids sequences can be used in vitro to
create complex reaction networks with precisely programmed chemical dynamics. Here, we …

Synthesis and materialization of a reaction–diffusion French flag pattern

AS Zadorin, Y Rondelez, G Gines, V Dilhas, G Urtel… - Nature …, 2017 - nature.com
During embryo development, patterns of protein concentration appear in response to
morphogen gradients. These patterns provide spatial and chemical information that directs …

Taylor–aris dispersion in nanotubes: Analytical solution, effects of slip and surface potential landscape, and measurement of the slip length

F Ebrahimi, M Neek-Amal, M Sahimi - The Journal of Physical …, 2024 - ACS Publications
Taylor–Aris (T–A) dispersion of a solute in a flowing solvent is a fundamental phenomenon
in most mass-transfer processes. Despite its significance and numerous applications in …

Improved cell-free transcription–translation reactions in microfluidic chemostats augmented with hydrogel membranes for continuous small molecule dialysis

B Lavickova, L Grasemann, SJ Maerkl - ACS Synthetic Biology, 2022 - ACS Publications
Increasing the protein production capacity of the PURE cell-free transcription–translation (TX-
TL) system will be key to implementing complex synthetic biological circuits, and to …

[BOOK][B] Visions of DNA Nanotechnology at 40 for the next 40: A Tribute to Nadrian C. Seeman

N Jonoska, E Winfree - 2023 - library.oapen.org
This open access book provides a unique and state-of-the-art view on DNA nanotechnology
with an eye toward future developments. Intended as a tribute to Nadrian C. Seeman, who …

Digital maskless photolithographic patterning of DNA-functionalized poly (ethylene glycol) diacrylate hydrogels with visible light enabling photodirected release of …

PJ Dorsey, M Rubanov, W Wang… - ACS Macro Letters, 2019 - ACS Publications
Soft biomaterials possessing structural hierarchy have growing applications in lab-on-chip
devices, artificial tissues, and micromechanical and chemomechanical systems. The ability …

rEXPAR: an isothermal amplification scheme that is robust to autocatalytic parasites

G Urtel, M Van Der Hofstadt, JC Galas… - Biochemistry, 2019 - ACS Publications
In the absence of DNA, a solution containing the four deoxynucleotidetriphosphates
(dNTPs), a DNA polymerase, and a nicking enzyme generates a self-replicating mixture of …

Chemical waves in reaction-diffusion networks of small organic molecules

A Paikar, X Li, L Avram, BS Smith, I Sütő, D Horváth… - Chemical …, 2025 - pubs.rsc.org
Chemical waves represent one of the fundamental behaviors that emerge in nonlinear, out-
of-equilibrium chemical systems. They also play a central role in regulating behaviors and …