Molecular weaving

ZH Zhang, BJ Andreassen, DP August, DA Leigh… - Nature Materials, 2022 - nature.com
Historically, the interlacing of strands at the molecular level has mainly been limited to
coordination polymers and DNA. Despite being proposed on a number of occasions, the …

The polymer physics of single DNA confined in nanochannels

L Dai, CB Renner, PS Doyle - Advances in colloid and interface science, 2016 - Elsevier
In recent years, applications and experimental studies of DNA in nanochannels have
stimulated the investigation of the polymer physics of DNA in confinement. Recent advances …

Direct observation of DNA knots using a solid-state nanopore

C Plesa, D Verschueren, S Pud, J Van Der Torre… - Nature …, 2016 - nature.com
Long DNA molecules can self-entangle into knots. Experimental techniques for observing
such DNA knots (primarily gel electrophoresis) are limited to bulk methods and circular …

Complex DNA knots detected with a nanopore sensor

R Kumar Sharma, I Agrawal, L Dai, PS Doyle… - Nature …, 2019 - nature.com
Equilibrium knots are common in biological polymers—their prevalence, size distribution,
structure, and dynamics have been extensively studied, with implications to fundamental …

Activity-driven polymer knotting for macromolecular topology engineering

JX Li, S Wu, LL Hao, QL Lei, YQ Ma - Science Advances, 2024 - science.org
Macromolecules can gain special properties by adopting knotted conformations, but
engineering knotted macromolecules is a challenging task. Here, we unexpectedly find that …

Glass formation in ring polymer melts having variable knot complexity and molecular mass

YT Dong, XY Song, X Xu, S Jiang, JF Douglas… - …, 2024 - ACS Publications
The variation of polymer topology provides an alternative way to tune the properties of
polymer materials without varying the chemistry of the monomers composing the polymer …

Pore translocation of knotted DNA rings

A Suma, C Micheletti - … of the National Academy of Sciences, 2017 - National Acad Sciences
We use an accurate coarse-grained model for DNA and stochastic molecular dynamics
simulations to study the pore translocation of 10-kbp–long DNA rings that are knotted. By …

A nanofluidic knot factory based on compression of single DNA in nanochannels

S Amin, A Khorshid, L Zeng, P Zimny… - Nature …, 2018 - nature.com
Knots form when polymers self-entangle, a process enhanced by compaction with important
implications in biological and artificial systems involving chain confinement. In particular …

Motion of knots in DNA stretched by elongational fields

AR Klotz, BW Soh, PS Doyle - Physical review letters, 2018 - APS
Knots in DNA occur in biological systems, serve as a model system for polymer
entanglement, and affect the efficacy of modern genomics technologies. We study the …

Diffusion of knots along DNA confined in nanochannels

Z Ma, KD Dorfman - Macromolecules, 2020 - ACS Publications
We study the diffusion of knots along relaxed deoxyribonucleic acid (DNA) in nanochannels
using a nanofluidic “knot factory” device for knot generation. The apparent scaling exponent …