Challenges and opportunities in sharing microbiome data and analyses
Microbiome data, metadata and analytical workflows have become 'big'in terms of volume
and complexity. Although the infrastructure and technologies to share data have been …
and complexity. Although the infrastructure and technologies to share data have been …
Genomes OnLine Database (GOLD) v. 8: overview and updates
S Mukherjee, D Stamatis, J Bertsch… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Genomes OnLine Database (GOLD)(https://gold. jgi. doe. gov/) is a manually
curated, daily updated collection of genome projects and their metadata accumulated from …
curated, daily updated collection of genome projects and their metadata accumulated from …
The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities
IMA Chen, K Chu, K Palaniappan, A Ratner… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Integrated Microbial Genomes & Microbiomes system (IMG/M: https://img. jgi.
doe. gov/m/) contains annotated isolate genome and metagenome datasets sequenced at …
doe. gov/m/) contains annotated isolate genome and metagenome datasets sequenced at …
Solutions in microbiome engineering: prioritizing barriers to organism establishment
Microbiome engineering is increasingly being employed as a solution to challenges in
health, agriculture, and climate. Often manipulation involves inoculation of new microbes …
health, agriculture, and climate. Often manipulation involves inoculation of new microbes …
Community standards and future opportunities for synthetic communities in plant–microbiota research
Harnessing beneficial microorganisms is seen as a promising approach to enhance
sustainable agriculture production. Synthetic communities (SynComs) are increasingly …
sustainable agriculture production. Synthetic communities (SynComs) are increasingly …
From microbiome composition to functional engineering, one step at a time
Communities of microorganisms (microbiota) are present in all habitats on Earth and are
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …
Metagenome-assembled genome extraction and analysis from microbiomes using KBase
Abstract Uncultivated Bacteria and Archaea account for the vast majority of species on Earth,
but obtaining their genomes directly from the environment, using shotgun sequencing, has …
but obtaining their genomes directly from the environment, using shotgun sequencing, has …
Priorities for ocean microbiome research
Tara Ocean Foundation Abreu Andre 1 Bourgois … - Nature …, 2022 - nature.com
Microbial communities have essential roles in ocean ecology and planetary health.
Microbes participate in nutrient cycles, remove huge quantities of carbon dioxide from the air …
Microbes participate in nutrient cycles, remove huge quantities of carbon dioxide from the air …
The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource
EA Eloe-Fadrosh, F Ahmed, M Babinski… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The National Microbiome Data Collaborative (NMDC) Data Portal (https://data.
microbiomedata. org) supports microbiome multi-omics data exploration and access through …
microbiomedata. org) supports microbiome multi-omics data exploration and access through …
Microbiome metadata standards: report of the National Microbiome Data Collaborative's workshop and follow-on activities
Microbiome samples are inherently defined by the environment in which they are found.
Therefore, data that provide context and enable interpretation of measurements produced …
Therefore, data that provide context and enable interpretation of measurements produced …