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Genomic tools in biological invasions: current state and future frontiers
Human activities are accelerating rates of biological invasions and climate-driven range
expansions globally, yet we understand little of how genomic processes facilitate the …
expansions globally, yet we understand little of how genomic processes facilitate the …
Accurate long-read de novo assembly evaluation with Inspector
Long-read de novo genome assembly continues to advance rapidly. However, there is a
lack of effective tools to accurately evaluate the assembly results, especially for structural …
lack of effective tools to accurately evaluate the assembly results, especially for structural …
[HTML][HTML] A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism
The domestic cat (Felis catus) numbers over 94 million in the USA alone, occupies
households as a companion animal, and, like humans, suffers from cancer and common and …
households as a companion animal, and, like humans, suffers from cancer and common and …
Haplotype threading: accurate polyploid phasing from long reads
Resolving genomes at haplotype level is crucial for understanding the evolutionary history of
polyploid species and for designing advanced breeding strategies. Polyploid phasing still …
polyploid species and for designing advanced breeding strategies. Polyploid phasing still …
Characterization of structural variation in Tibetans reveals new evidence of high-altitude adaptation and introgression
Background Structural variation (SV) acts as an essential mutational force sha** the
evolution and function of the human genome. However, few studies have examined the role …
evolution and function of the human genome. However, few studies have examined the role …
Personalized genome structure via single gamete sequencing
Genetic maps have been fundamental to building our understanding of disease genetics
and evolutionary processes. The gametes of an individual contain all of the information …
and evolutionary processes. The gametes of an individual contain all of the information …
Comprehensive characterization of copy number variation (CNV) called from array, long-and short-read data
Background SNP arrays, short-and long-read genome sequencing are genome-wide high-
throughput technologies that may be used to assay copy number variants (CNVs) in a …
throughput technologies that may be used to assay copy number variants (CNVs) in a …
CaBagE: A Ca s9-based Ba ck g round E limination strategy for targeted, long-read DNA sequencing
A substantial fraction of the human genome is difficult to interrogate with short-read DNA
sequencing technologies due to paralogy, complex haplotype structures, or tandem repeats …
sequencing technologies due to paralogy, complex haplotype structures, or tandem repeats …
Hidden biases in germline structural variant detection
Background Genomic structural variations (SV) are important determinants of genotypic and
phenotypic changes in many organisms. However, the detection of SV from next-generation …
phenotypic changes in many organisms. However, the detection of SV from next-generation …
Loss-of-function tolerance of enhancers in the human genome
Previous studies have surveyed the potential impact of loss-of-function (LoF) variants and
identified LoF-tolerant protein-coding genes. However, the tolerance of human genomes to …
identified LoF-tolerant protein-coding genes. However, the tolerance of human genomes to …