The oral microbiome: diversity, biogeography and human health

JL Baker, JL Mark Welch, KM Kauffman… - Nature Reviews …, 2024 - nature.com
The human oral microbiota is highly diverse and has a complex ecology, comprising
bacteria, microeukaryotes, archaea and viruses. These communities have elaborate and …

Innovations to culturing the uncultured microbial majority

WH Lewis, G Tahon, P Geesink, DZ Sousa… - Nature Reviews …, 2021 - nature.com
Despite the surge of microbial genome data, experimental testing is important to confirm
inferences about the cell biology, ecological roles and evolution of microorganisms. As the …

Bacterial culture through selective and non-selective conditions: the evolution of culture media in clinical microbiology

M Bonnet, JC Lagier, D Raoult, S Khelaifia - New microbes and new …, 2020 - Elsevier
Microbiology has been largely developed thanks to the discovery and optimization of culture
media. The first liquid artificial culture medium was created by Louis Pasteur in 1860 …

High proportions of bacteria and archaea across most biomes remain uncultured

AD Steen, A Crits-Christoph, P Carini… - The ISME …, 2019 - academic.oup.com
A recent paper by Martiny argues that “high proportions” of bacteria in diverse Earth
environments have been cultured. Here we reanalyze a portion of the data in that paper, and …

The inherent conflicts in develo** soil microbial inoculants

LM Kaminsky, RV Trexler, RJ Malik, KL Hockett… - Trends in …, 2019 - cell.com
Potentially beneficial microorganisms have been inoculated into agricultural soils for years.
However, concurrent with sequencing advances and successful manipulation of host …

From correlation to causality: the case of Subdoligranulum

M Van Hul, T Le Roy, E Prifti, MC Dao, A Paquot… - Gut …, 2020 - Taylor & Francis
Gut microbes are considered as major factors contributing to human health. Nowadays, the
vast majority of the data available in the literature are mostly exhibiting negative or positive …

Analysing microbial community composition through amplicon sequencing: from sampling to hypothesis testing

LW Hugerth, AF Andersson - Frontiers in microbiology, 2017 - frontiersin.org
Microbial ecology as a scientific field is fundamentally driven by technological advance. The
past decade's revolution in DNA sequencing cost and throughput has made it possible for …

Reactive oxygen species in the world ocean and their impacts on marine ecosystems

JJ Morris, AL Rose, Z Lu - Redox Biology, 2022 - Elsevier
Reactive oxygen species (ROS) are omnipresent in the ocean, originating from both
biological (eg, unbalanced metabolism or stress) and non-biological processes (eg …

Comprehensive description of blood microbiome from healthy donors assessed by 16 S targeted metagenomic sequencing

S Païssé, C Valle, F Servant, M Courtney… - …, 2016 - Wiley Online Library
BACKGROUND Recent studies have revealed that the blood of healthy humans is not as
sterile as previously supposed. The objective of this study was to provide a comprehensive …

The dormant blood microbiome in chronic, inflammatory diseases

M Potgieter, J Bester, DB Kell… - FEMS microbiology …, 2015 - academic.oup.com
Blood in healthy organisms is seen as a 'sterile'environment: it lacks proliferating microbes.
Dormant or not-immediately-culturable forms are not absent, however, as intracellular …