The protein-folding problem, 50 years on

KA Dill, JL MacCallum - science, 2012 - science.org
The protein-folding problem was first posed about one half-century ago. The term refers to
three broad questions:(i) What is the physical code by which an amino acid sequence …

Impact of GPCR structures on drug discovery

M Congreve, C de Graaf, NA Swain, CG Tate - Cell, 2020 - cell.com
Structures of 70 unique G protein-coupled receptors (GPCRs) have been determined, with
over 370 structures in total bound to different ligands and the receptors in various …

How good are AlphaFold models for docking-based virtual screening?

V Scardino, JI Di Filippo, CN Cavasotto - Iscience, 2023 - cell.com
A crucial component in structure-based drug discovery is the availability of high-quality three-
dimensional structures of the protein target. Whenever experimental structures were not …

Structure-based virtual screening for ligands of G protein–coupled receptors: what can molecular docking do for you?

F Ballante, AJ Kooistra, S Kampen, C de Graaf… - Pharmacological …, 2021 - Elsevier
G protein–coupled receptors (GPCRs) constitute the largest family of membrane proteins in
the human genome and are important therapeutic targets. During the last decade, the …

[HTML][HTML] Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions

SAI Seidel, PM Dijkman, WA Lea, G van den Bogaart… - Methods, 2013 - Elsevier
Microscale thermophoresis (MST) allows for quantitative analysis of protein interactions in
free solution and with low sample consumption. The technique is based on thermophoresis …

Methods of protein structure comparison

I Kufareva, R Abagyan - Homology modeling: Methods and protocols, 2012 - Springer
Despite its apparent simplicity, the problem of quantifying the differences between two
structures of the same protein or complex is nontrivial and continues evolving. In this …

Generic GPCR residue numbers–aligning topology maps while minding the gaps

V Isberg, C De Graaf, A Bortolato, V Cherezov… - Trends in …, 2015 - cell.com
Generic residue numbers facilitate comparisons of, for example, mutational effects, ligand
interactions, and structural motifs. The numbering scheme by Ballesteros and Weinstein for …

[HTML][HTML] Structure of the adenosine A2A receptor in complex with ZM241385 and the xanthines XAC and caffeine

AS Doré, N Robertson, JC Errey, I Ng, K Hollenstein… - Structure, 2011 - cell.com
Methylxanthines, including caffeine and theophylline, are among the most widely consumed
stimulant drugs in the world. These effects are mediated primarily via blockade of adenosine …

Diversity and modularity of G protein-coupled receptor structures

V Katritch, V Cherezov, RC Stevens - Trends in pharmacological sciences, 2012 - cell.com
G protein-coupled receptors (GPCRs) comprise the most 'prolific'family of cell membrane
proteins, which share a general mechanism of signal transduction, but greatly vary in ligand …

Docking techniques in pharmacology: How much promising?

M Gupta, R Sharma, A Kumar - Computational biology and chemistry, 2018 - Elsevier
Docking techniques in pharmacology: How much promising? - ScienceDirect Skip to main
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