[HTML][HTML] The gut mycobiome in health, disease, and clinical applications in association with the gut bacterial microbiome assembly

F Zhang, D Aschenbrenner, JY Yoo, T Zuo - The Lancet Microbe, 2022 - thelancet.com
The gut mycobiome (fungi) is a small but crucial component of the gut microbiome in
humans. Intestinal fungi regulate host homoeostasis, pathophysiological and physiological …

Colletotrichum: current status and future directions

PF Cannon, U Damm, PR Johnston… - Studies in …, 2012 - ingentaconnect.com
A review is provided of the current state of understanding of Colletotrichum systematics,
focusing on species-level data and the major clades. The taxonomic placement of the genus …

RESCRIPt: Reproducible sequence taxonomy reference database management

MS Robeson, DR O'Rourke, BD Kaehler… - PLoS computational …, 2021 - journals.plos.org
Nucleotide sequence and taxonomy reference databases are critical resources for
widespread applications including marker-gene and metagenome sequencing for …

Wildfire-dependent changes in soil microbiome diversity and function

AR Nelson, AB Narrowe, CC Rhoades, TS Fegel… - Nature …, 2022 - nature.com
Forest soil microbiomes have crucial roles in carbon storage, biogeochemical cycling and
rhizosphere processes. Wildfire season length, and the frequency and size of severe fires …

Disease-induced changes in plant microbiome assembly and functional adaptation

M Gao, C **ong, C Gao, CKM Tsui, MM Wang, X Zhou… - Microbiome, 2021 - Springer
Background The plant microbiome is an integral part of the host and increasingly recognized
as playing fundamental roles in plant growth and health. Increasing evidence indicates that …

The proportion of soil-borne pathogens increases with warming at the global scale

M Delgado-Baquerizo, CA Guerra, C Cano-Díaz… - Nature Climate …, 2020 - nature.com
Understanding the present and future distribution of soil-borne plant pathogens is critical to
supporting food and fibre production in a warmer world. Using data from a global field …

[KİTAP][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

Crop rotation and native microbiome inoculation restore soil capacity to suppress a root disease

Y Zhou, Z Yang, J Liu, X Li, X Wang, C Dai… - Nature …, 2023 - nature.com
It is widely known that some soils have strong levels of disease suppression and prevent the
establishment of pathogens in the rhizosphere of plants. However, what soils are better …

High-level classification of the Fungi and a tool for evolutionary ecological analyses

L Tedersoo, S Sánchez-Ramírez, U Koljalg, M Bahram… - Fungal diversity, 2018 - Springer
High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary
ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due …

The gut mycobiome of the Human Microbiome Project healthy cohort

AK Nash, TA Auchtung, MC Wong, DP Smith, JR Gesell… - Microbiome, 2017 - Springer
Background Most studies describing the human gut microbiome in healthy and diseased
states have emphasized the bacterial component, but the fungal microbiome (ie, the …