Bottom-up proteomics: advancements in sample preparation

VA Duong, H Lee - International Journal of Molecular Sciences, 2023 - mdpi.com
Liquid chromatography–tandem mass spectrometry (LC–MS/MS)-based proteomics is a
powerful technique for profiling proteomes of cells, tissues, and body fluids. Typical bottom …

Advances in the clinical use of metaproteomics

M Wolf, K Schallert, L Knipper, A Sickmann… - Expert review of …, 2023 - Taylor & Francis
Introduction Investigating the taxonomic and functional composition of human microbiomes
can aid in the understanding of disease etiologies, diagnosis, and therapy monitoring for …

From bottom-up to cell surface proteomics: detergents or no detergents, that is the question

Z Brough, Z Zhao… - Biochemical Society …, 2024 - portlandpress.com
Measuring the expression levels of membrane proteins (MPs) is crucial for understanding
cell differentiation and tissue specificity, defining disease characteristics, identifying …

Benchmarking low-and high-throughput protein cleanup and digestion methods for human fecal metaproteomics

A Tanca, MA Deledda, L De Diego, M Abbondio… - …, 2024 - journals.asm.org
The application of fecal metaproteomics to large-scale studies of the gut microbiota requires
high-throughput analysis and standardized experimental protocols. Although high …

A review of suspension trap** digestion method in bottom‐up proteomics

VA Duong, JM Park, H Lee - Journal of separation science, 2022 - Wiley Online Library
The standard bottom‐up proteomic workflow is comprised of sample preparation, data
acquisition, and data analysis. While the latter two parts have made considerable advances …

Recent progress on media for biological sample preparation

H Lai, G Li - Journal of Chromatography A, 2024 - Elsevier
The analysis of biological samples is highly valuable for disease diagnosis and treatment,
forensic examination, and public safety. However, the serious matrix interference effect …

Stool Protein Mass Spectrometry Identifies Biomarkers for Early Detection of Diffuse-type Gastric Cancer

CLC Ho, MB Gilbert, G Urtecho, H Lee… - Cancer Prevention …, 2024 - aacrjournals.org
There is a high unmet need for early detection approaches for diffuse gastric cancer (DGC).
We examined whether the stool proteome of mouse models of gastric cancer (GC) and …

Sample Preparation and Processing for Quick, Universal, and Insightful Microbial Proteomics

C Lozano, J Armengaud - Tissue Proteomics: Methods and Protocols, 2024 - Springer
Next-generation shotgun proteomics is one of the most valuable tools for gaining insight into
the function of organisms. By providing a list of peptides and abundance information …

Proteomics Analysis for Identification and Antimicrobial Resistance Analysis of Bacteria

D Zhang - 2023 - books.rsc.org
Bacteria are widely present in nature, such as water, soil, atmosphere, food, human and
animal body surfaces, and lumens connected to nature, and are closely related to human …

Discovering Stool Biomarkers as an Early Diagnostic Indicator of Diffuse Gastric Cancer and an Exploration of Therapeutic Strategies

CLC Ho - 2024 - search.proquest.com
Gastric cancer (GC) is the 4 th deadliest cancer worldwide in 2020 according to the WHO.
Poor patient prognosis is attributed to late-stage diagnosis and lack of effective treatments …