Ilastik: interactive machine learning for (bio) image analysis

S Berg, D Kutra, T Kroeger, CN Straehle, BX Kausler… - Nature …, 2019 - nature.com
We present ilastik, an easy-to-use interactive tool that brings machine-learning-based (bio)
image analysis to end users without substantial computational expertise. It contains pre …

Preparation of large biological samples for high-resolution, hierarchical, synchrotron phase-contrast tomography with multimodal imaging compatibility

J Brunet, CL Walsh, WL Wagner, A Bellier, C Werlein… - Nature protocols, 2023 - nature.com
Imaging across different scales is essential for understanding healthy organ morphology
and pathophysiological changes. The macro-and microscale three-dimensional morphology …

A rule‐based method to model myocardial fiber orientation in cardiac biventricular geometries with outflow tracts

R Doste, D Soto‐Iglesias, G Bernardino… - … journal for numerical …, 2019 - Wiley Online Library
Rule‐based methods are often used for assigning fiber orientation to cardiac anatomical
models. However, existing methods have been developed using data mostly from the left …

Next-generation hardware advances in CT: cardiac applications

AC Kwan, A Pourmorteza, D Stutman, DA Bluemke… - Radiology, 2021 - pubs.rsna.org
Impending major hardware advances in cardiac CT include three areas: ultra-high-
resolution (UHR) CT, photon-counting CT, and phase-contrast CT. Cardiac CT is a …

High-numerical-aperture macroscope optics for time-resolved experiments

M Bührer, M Stampanoni, X Rochet, F Büchi… - Synchrotron …, 2019 - journals.iucr.org
A novel high-quality custom-made macroscope optics, dedicated to high-resolution time-
resolved X-ray tomographic microscopy at the TOMCAT beamline at the Swiss Light Source …

A computational model applied to myocardial perfusion in the human heart: from large coronaries to microvasculature

S Di Gregorio, M Fedele, G Pontone, AF Corno… - Journal of …, 2021 - Elsevier
In this paper we present a mathematical and numerical model for human cardiac perfusion
which accounts for the different length scales of the vessels in the coronary tree. Epicardial …

[HTML][HTML] Defining myocardial fiber bundle architecture in atrial digital twins

R Piersanti, R Bradley, SY Ali, A Quarteroni… - Computers in Biology …, 2025 - Elsevier
A key component in develo** atrial digital twins (ADT)-virtual representations of patients'
atria—is the accurate prescription of myocardial fibers which are essential for the tissue …

Complex congenital heart disease associated with disordered myocardial architecture in a midtrimester human fetus

P Garcia-Canadilla, H Dejea, A Bonnin… - Circulation …, 2018 - ahajournals.org
Background: In the era of increasingly successful corrective interventions in patients with
congenital heart disease (CHD), global and regional myocardial remodeling are emerging …

Comprehensive analysis of animal models of cardiovascular disease using multiscale x-ray phase contrast tomography

H Dejea, P Garcia-Canadilla, AC Cook, E Guasch… - Scientific reports, 2019 - nature.com
Cardiovascular diseases (CVDs) affect the myocardium and vasculature, inducing
remodelling of the heart from cellular to whole organ level. To assess their impact at micro …

Layer-specific strain analysis with cardiac MRI feature tracking in acute myocarditis

A Isaak, D Kravchenko, N Mesropyan… - Radiology …, 2022 - pubs.rsna.org
Purpose To evaluate the diagnostic performance of layer-specific cardiac MRI feature-
tracking (FT) strain analysis in patients with acute myocarditis. Materials and Methods …