Microbial interactions with dissolved organic matter are central to coral reef ecosystem function and resilience

CE Nelson, L Wegley Kelly… - Annual Review of Marine …, 2023 - annualreviews.org
To thrive in nutrient-poor waters, coral reefs must retain and recycle materials efficiently. This
review centers microbial processes in facilitating the persistence and stability of coral reefs …

Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data

AK Pakkir Shah, A Walter, F Ottosson, F Russo… - Nature protocols, 2025 - nature.com
Feature-based molecular networking (FBMN) is a popular analysis approach for liquid
chromatography–tandem mass spectrometry-based non-targeted metabolomics data. While …

Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments

AB Chase, A Bogdanov, AM Demko… - The ISME …, 2023 - academic.oup.com
While the field of microbial biogeography has largely focused on the contributions of abiotic
factors to community patterns, the potential influence of biotic interactions in structuring …

In Situ Capture and Real-Time Enrichment of Marine Chemical Diversity

M Mauduit, M Derrien, M Grenier, S Greff… - ACS Central …, 2023 - ACS Publications
Analyzing the chemical composition of seawater to understand its influence on ecosystem
functions is a long-lasting challenge due to the inherent complexity and dynamic nature of …

Evaluation of data-dependent MS/MS acquisition parameters for non-targeted metabolomics and molecular networking of environmental samples: Focus on the Q …

P Stincone, AK Pakkir Shah, R Schmid… - Analytical …, 2023 - ACS Publications
Non-targeted liquid chromatography–tandem mass spectrometry (LC–MS/MS) is a widely
used tool for metabolomics analysis, enabling the detection and annotation of small …

Microorganisms and dissolved metabolites distinguish Florida's Coral Reef habitats

CC Becker, L Weber, B Zgliczynski, C Sullivan… - PNAS …, 2023 - academic.oup.com
As coral reef ecosystems experience unprecedented change, effective monitoring of reef
features supports management, conservation, and intervention efforts. Omic techniques …

Inorganic and organic nutrients in tropical–subtropical Western Pacific coral reef waters

HT Lin, V Denis, CC Hsieh, CJ Chen, WV Hsiao… - Coral Reefs, 2024 - Springer
Coral reef ecosystems host diversified and highly productive communities, but corals are
degrading in many places worldwide. Picking suitable locations to maximize coral …

Mass difference matching unfolds hidden molecular structures of dissolved organic matter

C Simon, K Dührkop, D Petras, VN Roth… - Environmental …, 2022 - ACS Publications
Ultrahigh-resolution Fourier transform mass spectrometry (FTMS) has revealed
unprecedented details of natural complex mixtures such as dissolved organic matter (DOM) …

Cultivation of different seaweed species and seasonal changes cause divergence of the microbial community in coastal seawaters

N Xu, W Wang, K Xu, Y Xu, D Ji, C Chen… - Frontiers in …, 2022 - frontiersin.org
Although the effects of certain species of seaweed on the microbial community structure
have long been a research focus in marine ecology, the response of the microbial …