Rules and tools to predict the splicing effects of exonic and intronic mutations
K Ohno, J Takeda, A Masuda - Wiley Interdisciplinary Reviews …, 2018 - Wiley Online Library
Development of next generation sequencing technologies has enabled detection of
extensive arrays of germline and somatic single nucleotide variations (SNVs) in human …
extensive arrays of germline and somatic single nucleotide variations (SNVs) in human …
In silico prediction of splice-altering single nucleotide variants in the human genome
X Jian, E Boerwinkle, X Liu - Nucleic acids research, 2014 - academic.oup.com
In silico tools have been developed to predict variants that may have an impact on pre-
mRNA splicing. The major limitation of the application of these tools to basic research and …
mRNA splicing. The major limitation of the application of these tools to basic research and …
Circular RNA biogenesis can proceed through an exon-containing lariat precursor
Pervasive expression of circular RNA is a recently discovered feature of eukaryotic gene
expression programs, yet its function remains largely unknown. The presumed biogenesis of …
expression programs, yet its function remains largely unknown. The presumed biogenesis of …
Introduction to fission yeast as a model system
J Hayles, P Nurse - Cold Spring Harbor Protocols, 2018 - cshprotocols.cshlp.org
Introduction to Fission Yeast as a Model System Cold Spring Harbor Protocols Skip to main
page content HOME ABOUT SUBJECT CATEGORIES ARCHIVE SUBSCRIBE ADVERTISE …
page content HOME ABOUT SUBJECT CATEGORIES ARCHIVE SUBSCRIBE ADVERTISE …
Genome-wide discovery of human splicing branchpoints
During the splicing reaction, the 5′ intron end is joined to the branchpoint nucleotide,
selecting the next exon to incorporate into the mature RNA and forming an intron lariat …
selecting the next exon to incorporate into the mature RNA and forming an intron lariat …
Genome-wide detection of human variants that disrupt intronic branchpoints
Pre-messenger RNA splicing is initiated with the recognition of a single-nucleotide intronic
branchpoint (BP) within a BP motif by spliceosome elements. Forty-eight rare variants in 43 …
branchpoint (BP) within a BP motif by spliceosome elements. Forty-eight rare variants in 43 …
[HTML][HTML] Identification of prognostic immune-related genes in the tumor microenvironment of endometrial cancer
P Chen, Y Yang, Y Zhang, S Jiang, X Li… - Aging (Albany NY), 2020 - ncbi.nlm.nih.gov
Endometrial cancer (EC) is one of the most common gynecologic malignancies. To identify
potential prognostic biomarkers for EC, we analyzed the relationship between the EC tumor …
potential prognostic biomarkers for EC, we analyzed the relationship between the EC tumor …
Inborn errors of RNA lariat metabolism in humans with brainstem viral infection
SY Zhang, NE Clark, CA Freije, E Pauwels, AJ Taggart… - Cell, 2018 - cell.com
Viruses that are typically benign sometimes invade the brainstem in otherwise healthy
children. We report bi-allelic DBR1 mutations in unrelated patients from different ethnicities …
children. We report bi-allelic DBR1 mutations in unrelated patients from different ethnicities …
Large-scale analysis of branchpoint usage across species and cell lines
AJ Taggart, CL Lin, B Shrestha, C Heintzelman… - Genome …, 2017 - genome.cshlp.org
The coding sequence of each human pre-mRNA is interrupted, on average, by 11 introns
that must be spliced out for proper gene expression. Each intron contains three obligate …
that must be spliced out for proper gene expression. Each intron contains three obligate …
Long-read sequencing of nascent RNA reveals coupling among RNA processing events
Pre-mRNA splicing is accomplished by the spliceosome, a megadalton complex that
assembles de novo on each intron. Because spliceosome assembly and catalysis occur …
assembles de novo on each intron. Because spliceosome assembly and catalysis occur …