Overview of the Antimicrobial Compounds Produced by Members of the Bacillus subtilis Group

S Caulier, C Nannan, A Gillis, F Licciardi… - Frontiers in …, 2019 - frontiersin.org
Over the last seven decades, applications using members of the Bacillus subtilis group have
emerged in both food processes and crop protection industries. Their ability to form survival …

Protein Data Bank (PDB): the single global macromolecular structure archive

SK Burley, HM Berman, GJ Kleywegt… - … : methods and protocols, 2017 - Springer
Abstract The Protein Data Bank (PDB)––the single global repository of experimentally
determined 3D structures of biological macromolecules and their complexes––was …

Computational approaches to natural product discovery

MH Medema, MA Fischbach - Nature chemical biology, 2015 - nature.com
Starting with the earliest Streptomyces genome sequences, the promise of natural product
genome mining has been captivating: genomics and bioinformatics would transform …

antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers

K Blin, MH Medema, D Kazempour… - Nucleic acids …, 2013 - academic.oup.com
Microbial secondary metabolites are a potent source of antibiotics and other
pharmaceuticals. Genome mining of their biosynthetic gene clusters has become a key …

A roadmap for natural product discovery based on large-scale genomics and metabolomics

JR Doroghazi, JC Albright, AW Goering, KS Ju… - Nature chemical …, 2014 - nature.com
Actinobacteria encode a wealth of natural product biosynthetic gene clusters, whose
systematic study is complicated by numerous repetitive motifs. By combining several metrics …

NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity

M Röttig, MH Medema, K Blin, T Weber… - Nucleic acids …, 2011 - academic.oup.com
The products of many bacterial non-ribosomal peptide synthetases (NRPS) are highly
important secondary metabolites, including vancomycin and other antibiotics. The ability to …

Global chemical analysis of biology by mass spectrometry

AA Aksenov, R da Silva, R Knight, NP Lopes… - Nature Reviews …, 2017 - nature.com
Mass spectrometry instruments measure the mass to charge ratio of ions, from which we
infer the molecular structures. They are key tools for investigating the incredibly diverse …

[HTML][HTML] The secondary metabolite bioinformatics portal: computational tools to facilitate synthetic biology of secondary metabolite production

T Weber, HU Kim - Synthetic and Systems Biotechnology, 2016 - Elsevier
Natural products are among the most important sources of lead molecules for drug
discovery. With the development of affordable whole-genome sequencing technologies and …

Nonribosomal peptide synthetases: structures and dynamics

M Strieker, A Tanović, MA Marahiel - Current opinion in structural biology, 2010 - Elsevier
Nonribosomal peptide synthetases (NRPSs) are large multimodular biocatalysts that utilize
complex regiospecific and stereospecific reactions to assemble structurally and functionally …

Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters

K Blin, HU Kim, MH Medema… - Briefings in …, 2019 - academic.oup.com
Many drugs are derived from small molecules produced by microorganisms and plants, so-
called natural products. Natural products have diverse chemical structures, but the …